PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0441s00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 316aa MW: 36462.8 Da PI: 8.4838 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 14 | 37 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 kC C + F+ ++L+ H+r H Vang0441s00120.1 14 KCAACFRQFNKLEHLVEHMRIsyH 37 6999****************8666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 7.3 | 13 | 37 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 13 | 42 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 15 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 42 | 62 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 31 | 77 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF53098 | 1.1E-10 | 144 | 262 | IPR012337 | Ribonuclease H-like domain |
Gene3D | G3DSA:3.30.420.10 | 1.2E-17 | 155 | 267 | IPR012337 | Ribonuclease H-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MDCRIESTET HRNKCAACFR QFNKLEHLVE HMRISYHSVH EPTCGICRKH CRSFESLREH 60 LIGPLPKQEC RDIFAYRGCK FCLKVFDSPN SRRIHQEKCQ HSGTNAGIIG RFSNLGLRDN 120 LAISGGARGP QVVALACKMV GGGSDGSLDL CGRVPEYLRD AMPMRQVQRR IQDFLCNGEP 180 MWTIRARGGR ARILVGHGLD HDLECLQIEY RTEKIRDTAK YPPLMKTSKL SNSLKYDIQV 240 GIQDPYDDCV ATMRLYMRMR SQLHRTQDYP LVSDPQNRNN FASWRQSELE RMTPEQMLEI 300 SRSDYYCWCF DSLYP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0441s00120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-133 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497587.1 | 0.0 | apoptosis-enhancing nuclease-like | ||||
TrEMBL | A0A0S3RW52 | 0.0 | A0A0S3RW52_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140956.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2574 | 3 | 4 |