PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0410s00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 163aa MW: 18761.5 Da PI: 9.85 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.9 | 3.8e-40 | 28 | 148 | 3 | 119 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtdeelv++yL++k+++k++++ + ik++diyk++Pw+Lp + + +++eke yfF +r +ky+++ r+nrat sg+Wkatg dk+ + Vang0410s00030.1 28 PGFRFHPTDEELVSFYLRRKLHKKPINI-DLIKQIDIYKYDPWNLPtEnNGSGGEKEGYFFYRRGRKYRNSIRPNRATGSGFWKATGIDKPGY 119 9***************************.99***************532444477899*********************************** PP NAM 94 sk...kgelvglkktLvfykgrapkgekt 119 s+ ++ +glkktLv+y++++ kg+kt Vang0410s00030.1 120 SQggeGNDCIGLKKTLVYYRASTGKGTKT 148 *96655555**********9999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.141 | 26 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-39 | 27 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-19 | 28 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MNFNEEELRV DLETLLVNNE FICEIPLPGF RFHPTDEELV SFYLRRKLHK KPINIDLIKQ 60 IDIYKYDPWN LPTENNGSGG EKEGYFFYRR GRKYRNSIRP NRATGSGFWK ATGIDKPGYS 120 QGGEGNDCIG LKKTLVYYRA STGKGTKTYK LLLIRKVIVS TI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-34 | 28 | 148 | 19 | 133 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-34 | 28 | 148 | 19 | 133 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-34 | 28 | 148 | 19 | 133 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-34 | 28 | 148 | 19 | 133 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-34 | 28 | 148 | 22 | 136 | NAC domain-containing protein 19 |
3swm_B | 5e-34 | 28 | 148 | 22 | 136 | NAC domain-containing protein 19 |
3swm_C | 5e-34 | 28 | 148 | 22 | 136 | NAC domain-containing protein 19 |
3swm_D | 5e-34 | 28 | 148 | 22 | 136 | NAC domain-containing protein 19 |
3swp_A | 5e-34 | 28 | 148 | 22 | 136 | NAC domain-containing protein 19 |
3swp_B | 5e-34 | 28 | 148 | 22 | 136 | NAC domain-containing protein 19 |
3swp_C | 5e-34 | 28 | 148 | 22 | 136 | NAC domain-containing protein 19 |
3swp_D | 5e-34 | 28 | 148 | 22 | 136 | NAC domain-containing protein 19 |
3ulx_A | 5e-34 | 28 | 148 | 17 | 131 | Stress-induced transcription factor NAC1 |
4dul_A | 5e-34 | 28 | 148 | 19 | 133 | NAC domain-containing protein 19 |
4dul_B | 5e-34 | 28 | 148 | 19 | 133 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0410s00030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-150 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017431950.1 | 1e-101 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 5e-56 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1S3U495 | 2e-75 | A0A1S3U495_VIGRR; transcription factor JUNGBRUNNEN 1 | ||||
STRING | XP_007149303.1 | 5e-75 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-49 | NAC domain containing protein 42 |