PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g18180.1 | ||||||||
Common Name | LR48_Vigan10g069900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 44863.5 Da PI: 8.6912 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 312 | 334 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC CgksF++ L H ++H Vang03g18180.1 312 YKCAACGKSFKTFQGLGGHRSVH 334 9***********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 21 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.6E-6 | 51 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.25E-6 | 310 | 338 | No hit | No description |
SMART | SM00355 | 0.27 | 312 | 334 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.572 | 312 | 339 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-6 | 312 | 336 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 314 | 334 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MDRRDNGKQA VSDHVLDSCT KEKMKRSVLG SCKAEVESVA DEENPSPKLS QCDICLKIFG 60 CGKALGGHRR SHFMKQQQQK KVKTRFTDNH TSKPSGDNNI RVICDFDDDD GKHICCICKK 120 EFPTKNAFWL CKGTRGRSSI GAYQAAETLF YMSCSKYFSS HERNRVFPKK DEVPPKSAPT 180 LIKQCKRKTF ESSPSKKDKV KKIKFLFKGE LNLGSTSNGV GECDGEGNRL NRCKGLSESG 240 VEHNHDEKKM KSFDDLNGES VTPTMQDHVG PSDVKKINMD KKGKNGKKLV LNSRTKDSES 300 EKAASQEKAD WYKCAACGKS FKTFQGLGGH RSVHKEKNTV SIDEPNPSEA VAEQNNSSSS 360 SNMNKMEDPL FNETTLADQP CQSSGVKKLN FDLNELPCAN DED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g18180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438062.1 | 0.0 | PREDICTED: uncharacterized protein LOC108344105 | ||||
TrEMBL | A0A1S3W2T0 | 0.0 | A0A1S3W2T0_VIGRR; uncharacterized protein LOC106780682 | ||||
STRING | XP_007146189.1 | 1e-134 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15181 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 9e-07 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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