PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g17550.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 288aa    MW: 31493.9 Da    PI: 7.9958
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g17550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.49.8e-16207268162
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     +ke+kr +r+ +NR++A+  R+RKka++  Le++vk Le++N++Lk++l++l++e + l++ 
  Vang03g17550.1 207 DKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQI 268
                     689******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.3E-2836109No hitNo description
Gene3DG3DSA:3.30.40.103.1E-2637109IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF145695.0E-3138104IPR027934Cellulose synthase, RING-type zinc finger
PROSITE profilePS500899.484894IPR001841Zinc finger, RING-type
CDDcd001620.003414897No hitNo description
SMARTSM003385.0E-17207271IPR004827Basic-leucine zipper domain
PfamPF001704.6E-14208269IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.702209272IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.38E-13211269No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-16211271No hitNo description
CDDcd147045.55E-22212263No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MHADPTVPNL PRSLTAAFDY TNSTWFTLLH DYPFYTSKPL KNLNGQICQI CGDTIGLTAT  60
GDVFVACHEC GFSLCHSCYE YELKNVSQSC PQCKTRFTSQ QEDADFSSSS GHDSQIPNPH  120
LANGQPMSGD IPYATSDAQS MQTTSGPMAN TKQPGLESDE EIRRVPEIGG ESGGTAASRP  180
EAGSNAGAER AQGTGEGQKK RGRSPADKES KRLKRLLRNR VSAQQARERK KAYLIDLETR  240
VKDLEKKNSE LKERLSTLQN ENQMLRQILK NTTASRRGSN SGTNNAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1weo_A6e-253897968cellulose synthase, catalytic subunit (IRX3)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g17550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYSTF1A1e-155L28003.1 Glycine max TGACG-motif binding protein (STF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434138.11e-178PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming]-like
TrEMBLA0A0L9VAP81e-177A0A0L9VAP8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7I51e-177A0A0S3S7I5_PHAAN; Uncharacterized protein
STRINGXP_007146305.11e-164(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70643248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-58bZIP family protein