PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g17430.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 603aa    MW: 66807.2 Da    PI: 6.6984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g17430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.71.8e-17406452455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Vang03g17430.1 406 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 452
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-19399459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-20405480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-15405450No hitNo description
PfamPF000105.7E-15406452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-18408457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MRLEEEAAEY DLRLGFASRI LQVVKFEISL QVYCEARFKC NLELIFGFLL GAMNNSVPDW  60
NFGSDSCITN NQKKPMGVDQ ELVELLWQNG QVVLHSQTHR KPVVNSITPR PLQRAFQSTL  120
RTSEPFGNSS NLIQDDETVS WIQYPLEDPL EQEFCSNLLS ELPQCDVESY KQIKPFEEAK  180
FTKLDASGAP HVLVSSQSPT MKSSSFQELS GIPIPAPRFH VSDSPQKNNN DLGGGPCKVQ  240
NFSHFSPTLN VSSALPNGRF RDKITGNMSK NEVRECSLMT VGSSYCGSNH MTQDPDASRA  300
SSNGVWTTTL SVDPEAVRDD VPRTIPLSEK GKSEMLEPTA TSSSGGSGSS LGKTCSLSTR  360
NQSQKRKTID VEESEDHSED TELKSPVGNK TSQRTGSARR NRAAEVHNLS ERRRRDRINE  420
KMKALQQLIP HSSKTDKASM LEEAIEYLKS LQLQLQLMWM GSGMAPMMFP GIQHYMSQMG  480
MGMATSPFPP IQNPMQLPRV PLDHPVSSSQ TPNQTLMCQN PILGAFNYQN QMQNPALSEQ  540
YARYMGYHLM QNASQPINVF RYGPQAVQHS QTMITPSNSS GNMSGAANID ETVSGKMGKP  600
FA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410415ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g17430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437258.10.0PREDICTED: transcription factor PIF4-like isoform X2
TrEMBLA0A0L9VAX20.0A0A0L9VAX2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7I90.0A0A0S3S7I9_PHAAN; Uncharacterized protein
STRINGXP_007146296.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-46phytochrome interacting factor 4