PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g16900.3 | ||||||||
Common Name | LR48_Vigan272s000200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CO-like | ||||||||
Protein Properties | Length: 410aa MW: 44563.6 Da PI: 4.536 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.3e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Vang03g16900.3 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP | |||||||
2 | zf-B_box | 20.3 | 1.2e-06 | 46 | 86 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C++++++++ C + + lC++C +H g H++ Vang03g16900.3 46 LLCERCNSQPAFVRCVEEKISLCQNCDWLGH-GvstsstHKR 86 57*************************9999.6677777775 PP | |||||||
3 | CCT | 60.4 | 5.9e-21 | 352 | 395 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k RkFeK++rY+sRKa+A+ R RvKGrFvk+ Vang03g16900.3 352 RSNAVLRYKEKKKARKFEKQVRYASRKARADIRRRVKGRFVKAG 395 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.684 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.51E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 3.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.731 | 43 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.12E-4 | 47 | 87 | No hit | No description |
SMART | SM00336 | 2 | 48 | 89 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.051 | 352 | 394 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.5E-15 | 352 | 394 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC 60 VEEKISLCQN CDWLGHGVST SSTHKRQGIS CYSGCPSAAE LSSIWSFVLD IPSIRESTCE 120 QELGLMSINE NSESVGVPPE NGNVSVSDQV TDLPALDRSF VGTSSIPESS SETRILDQPD 180 GPANECLPKL YCPATKCPAL CEDDNLYDDF DMDEVDLNLE NYEELFGMAL SHSEELFENG 240 GIDSLFGTKD MSAGDSSCQD AIAAEGSSVG LVNATQPACS NAASADSILS TKTEPILCFT 300 GRQAQSNLSF SGITGESSAA DYQDCGTTSM LLMGEPPWFA PCPENSLQSA NRSNAVLRYK 360 EKKKARKFEK QVRYASRKAR ADIRRRVKGR FVKAGDVYDY DPLSTTRSC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g16900.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017406548.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406549.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406550.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406551.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406553.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_017406554.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-152 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A0L9T8J6 | 0.0 | A0A0L9T8J6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S847 | 0.0 | A0A0S3S847_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146011.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-145 | CONSTANS-like 9 |
Publications ? help Back to Top | |||
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