PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g15530.2
Common NameLR48_Vigan09g203300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 124aa    MW: 14200.1 Da    PI: 9.5547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g15530.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.4e-141049249
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49
                    +y+GVr+++ +g+++A Irdp+    r  r++lg+f+t    aka+++a
  Vang03g15530.2 10 HYRGVRQRP-WGKFAAKIRDPK----RgSRVWLGTFDT----AKAYDRA 49
                    8********.**********83....46**********....5555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.5E-232120IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.102.4E-26964IPR001471AP2/ERF domain
CDDcd000188.89E-26963No hitNo description
PROSITE profilePS5103217.8331063IPR001471AP2/ERF domain
PfamPF008472.2E-81049IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-171065IPR016177DNA-binding domain
SMARTSM003801.5E-291069IPR001471AP2/ERF domain
PRINTSPR003677.6E-121122IPR001471AP2/ERF domain
PRINTSPR003677.6E-124565IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
LSENQPEKKH YRGVRQRPWG KFAAKIRDPK RGSRVWLGTF DTAKAYDRAT FRLCGSKAIL  60
NFPLEASAVE EVADAEGEKK QRREEEEVEE VKPVVKKEKT TEQEVKCFRE FSEVPKVANF  120
LSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-27970470ATERF1
3gcc_A9e-27970470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g15530.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422112.17e-45PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803414e-34EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0L9VFB36e-83A0A0L9VFB3_PHAAN; Uncharacterized protein
STRINGGLYMA17G15460.13e-37(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-29ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]