PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g14800.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 559aa    MW: 62515.8 Da    PI: 4.968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g14800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.23.2e-1311885581374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+e L++cA+a++ +d+e +++++++ ++++s +g+p+qRl ay++e L ar+a+s+s++yk+l++se +     e l+++++++ev+P++kf++
  Vang03g14800.1 188 LKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYIVESLVARMADSGSTIYKSLKCSEPT---GNELLSYMHVLYEVCPYFKFGY 279
                     5789*****************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     l aN aI ea+++e++vHiiDf+isqG+QW++L++aLa Rp+gpp++Ri gv+++ s+  +   l  +g+rL+ +Ae+++vpfefn+ v    ++
  Vang03g14800.1 280 LSANGAIAEALKEESEVHIIDFQISQGTQWVSLIHALAHRPGGPPKIRISGVDDSFSSyaRGGGLDIVGKRLSALAESCNVPFEFNA-VRVPASQ 373
                     ******************************************************776688999************************.7999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l++L+++p Ea+aVn++++lh+++d sv+ +++rd++L+l k+lsPkvv++veqe ++n+++Fl+rf+e+++yy a+fds++a  pre++eri
  Vang03g14800.1 374 VQLKDLELRPYEAVAVNFAIMLHHVPDASVNGHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSIDAARPREDKERI 468
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+re+vn++aceg+er+erhe l+kWr+r+++aGF+p+pl++++++++k ll+ ++++ y++ee++g+l+lgWk++ L++ +aWr
  Vang03g14800.1 469 NVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTDAGFSPYPLNSFINSSIKDLLQSYHGH-YTLEEKDGALFLGWKNQVLIASCAWR 558
                     **************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.257162539IPR005202Transcription factor GRAS
PfamPF035141.1E-128188558IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
LYLDLELVGL FSMQTSQNHK ISYGSGGFYV EPVQNLESYC LPSSENIDNY SSSDNSSQTT  60
YPSVQTLEQY CTLESASTSN SFPCQNSPPA LSFSSNNSPL SKIESTSYVL RPQHSLEIAS  120
GPPENDPYAI LDLDDLSHKM RELETAMLGP NVDMLDIYGA LMPGEADSIL LEAEKWKKMM  180
EMVSRGDLKE MLYTCAKAMA VNDMETTEWM MSESRKMVSV SGNPIQRLGA YIVESLVARM  240
ADSGSTIYKS LKCSEPTGNE LLSYMHVLYE VCPYFKFGYL SANGAIAEAL KEESEVHIID  300
FQISQGTQWV SLIHALAHRP GGPPKIRISG VDDSFSSYAR GGGLDIVGKR LSALAESCNV  360
PFEFNAVRVP ASQVQLKDLE LRPYEAVAVN FAIMLHHVPD ASVNGHNHRD RLLRLAKHLS  420
PKVVTLVEQE FNTNNAPFLQ RFVETMNYYL AVFDSIDAAR PREDKERINV EQHCLAREVV  480
NLIACEGEER VERHELLNKW RMRFTDAGFS PYPLNSFINS SIKDLLQSYH GHYTLEEKDG  540
ALFLGWKNQV LIASCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6019555726378Protein SCARECROW
5b3h_A2e-6019555725377Protein SCARECROW
5b3h_D2e-6019555725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g14800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437379.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_017437380.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_017437381.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_017437382.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0S3S6U80.0A0A0S3S6U8_PHAAN; Uncharacterized protein
STRINGXP_007146593.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]