PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g14410.2 | ||||||||
Common Name | LR48_Vigan09g095300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 175aa MW: 19229.9 Da PI: 4.8839 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 102.6 | 2.9e-32 | 1 | 89 | 8 | 96 |
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +Pi+nv++im+k lP+ ak+s+ ake++q ++++i+ vt +a +kcq e rk +n+ddllwa+ ++Gf++y+ pl+++l++ r++eg+ Vang03g14410.2 1 MPITNVTKIMRKFLPNTAKVSDGAKEMIQLSATNYITHVTRKAKEKCQSEYRKIMNADDLLWAIENVGFDEYIGPLSTFLQRCRHFEGA 89 8*************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.05E-23 | 1 | 90 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-16 | 1 | 64 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.7E-28 | 1 | 90 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 1.9E-5 | 28 | 46 | No hit | No description |
PRINTS | PR00615 | 1.9E-5 | 47 | 65 | No hit | No description |
PRINTS | PR00615 | 1.9E-5 | 66 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MPITNVTKIM RKFLPNTAKV SDGAKEMIQL SATNYITHVT RKAKEKCQSE YRKIMNADDL 60 LWAIENVGFD EYIGPLSTFL QRCRHFEGAS ANGPAFGPTF GPDLNPLEMP HPPLPPPPPP 120 PPPPVVCSSG LDFSMQQNTI FDPNDVSGYL DGVGCSNNAF INFDPFSLFQ QDQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-26 | 1 | 84 | 13 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g14410.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434602.1 | 1e-128 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
TrEMBL | A0A0L9VCA8 | 1e-126 | A0A0L9VCA8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S6L3 | 1e-126 | A0A0S3S6L3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146648.1 | 1e-84 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 2e-29 | NF-YB family protein |
Publications ? help Back to Top | |||
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