PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang03g14410.1 | ||||||||
Common Name | LR48_Vigan09g095300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 183aa MW: 20128 Da PI: 5.669 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 104.8 | 6e-33 | 7 | 97 | 6 | 96 |
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +Pi+nv++im+k lP+ ak+s+ ake++q ++++i+ vt +a +kcq e rk +n+ddllwa+ ++Gf++y+ pl+++l++ r++eg+ Vang03g14410.1 7 SKMPITNVTKIMRKFLPNTAKVSDGAKEMIQLSATNYITHVTRKAKEKCQSEYRKIMNADDLLWAIENVGFDEYIGPLSTFLQRCRHFEGA 97 579*************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.2E-29 | 5 | 98 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.9E-17 | 8 | 72 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.24E-23 | 8 | 98 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 2.1E-5 | 36 | 54 | No hit | No description |
PRINTS | PR00615 | 2.1E-5 | 55 | 73 | No hit | No description |
PRINTS | PR00615 | 2.1E-5 | 74 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
LIGRDKSKMP ITNVTKIMRK FLPNTAKVSD GAKEMIQLSA TNYITHVTRK AKEKCQSEYR 60 KIMNADDLLW AIENVGFDEY IGPLSTFLQR CRHFEGASAN GPAFGPTFGP DLNPLEMPHP 120 PLPPPPPPPP PPVVCSSGLD FSMQQNTIFD PNDVSGYLDG VGCSNNAFIN FDPFSLFQQD 180 QL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-26 | 9 | 92 | 13 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang03g14410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434602.1 | 1e-134 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
TrEMBL | A0A0L9VCA8 | 1e-133 | A0A0L9VCA8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S6L3 | 1e-132 | A0A0S3S6L3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146648.1 | 1e-90 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21970.1 | 2e-29 | NF-YB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|