PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g12580.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 416aa MW: 45217.8 Da PI: 7.183

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g12580.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	216	274	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l se+ Vang03g12580.1 216 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 274 9*****************************************99999888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-16	212	276	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	214	277	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.1E-9	216	274	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	216	267	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-8	216	271	No hit	No description
CDD	cd14703	2.52E-22	217	266	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MCWQRGEEER REIARYRVRN RASIGKNRTQ KGMATQTQDS PSNPNPNPNA TSPTPSSSLF 60 FRGAGASAAP FAGSGESHSH HRRALSEVSY RLPDDMMDLS PSDPFNGGSS TASLEEIGSE 120 DDLFSTYIDV EKLGSGANGA GRGGNGSDQS GYGNGAGISE HNDGEKSPRA AEARPRHRHS 180 SSVDGSSSTS MFGEIMEAKK AMPPDKLAEL WNIDPKRAKR ILANRQSAAR SKERKARYIQ 240 ELERKVQTLQ TEATTLSAQL TLYQRDTTGL SSENTELKLR LQAMEQQAQL RDALNDALMK 300 EVERLKIATG EVLNNHSESF NMGMHQMPFA GSNFFSIPPH SGPPSHQNMQ LPPYGLSQSS 360 MPAHQLQQTN SHQISDILQN DQLGRLQGLD ISSKGSPFVK SEGPSISAND SSTTF*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MCWQRGEEER REIARYRVRN RASIGKNRTQ KGMATQTQDS PSNPNPNPNA TSPTPSSSLF  60
FRGAGASAAP FAGSGESHSH HRRALSEVSY RLPDDMMDLS PSDPFNGGSS TASLEEIGSE  120
DDLFSTYIDV EKLGSGANGA GRGGNGSDQS GYGNGAGISE HNDGEKSPRA AEARPRHRHS  180
SSVDGSSSTS MFGEIMEAKK AMPPDKLAEL WNIDPKRAKR ILANRQSAAR SKERKARYIQ  240
ELERKVQTLQ TEATTLSAQL TLYQRDTTGL SSENTELKLR LQAMEQQAQL RDALNDALMK  300
EVERLKIATG EVLNNHSESF NMGMHQMPFA GSNFFSIPPH SGPPSHQNMQ LPPYGLSQSS  360
MPAHQLQQTN SHQISDILQN DQLGRLQGLD ISSKGSPFVK SEGPSISAND SSTTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g12580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434996.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	1e-104	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A0S3S621	0.0	A0A0S3S621_PHAAN; Uncharacterized protein
STRING	XP_007146883.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	2e-90	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]