PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g11990.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 345aa    MW: 38664.7 Da    PI: 5.7329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g11990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13154205155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i   A++++k+L+
  Vang03g11990.1 154 QRMTHIAVERNRRKQMNEYLSVLRALMPES---YVQRGDQASIIGGAINFVKELE 205
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.56E-13152209No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.148153204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16153218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
LLFSISIFFI LFLFQGTHIK NFCMCLSEGE RGMALEAVVY PQPQDPFGCA IKDLYSYNNL  60
LEAAAANLGY GDFTLEKEDQ ASVTFLDNQT ENYSYGEWNS SPPSLLPHTI NASNPPSSET  120
SNTQNNLDTS VSTPARPKRR RTKSRKNKEE IENQRMTHIA VERNRRKQMN EYLSVLRALM  180
PESYVQRGDQ ASIIGGAINF VKELEQRLQF LGAQKEKEGK PEVPFSEFFS FPQYSTSPSG  240
GCDNSAAMSD QKGEVQSGIA DIEVTMVESH ANLKIRSKKR PKQLLKIVSS LHGMRLTILH  300
LNVTTTEEIV LYSLNVKVEE DCKLGSVDEI AAAVYEMLNR IQQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154165RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g11990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435282.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T43e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0S3S5E10.0A0A0S3S5E1_PHAAN; Uncharacterized protein
STRINGXP_007147072.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]