PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g11710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 550aa MW: 60029.5 Da PI: 9.3822 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vang03g11710.1 138 FVCEICNKGFQRDQNLQLHRRGH 160 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 137 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.59E-6 | 137 | 160 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 138 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 138 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 96 | 179 | 209 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.3E-4 | 202 | 235 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.59E-6 | 209 | 234 | No hit | No description |
SMART | SM00355 | 150 | 214 | 234 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
EFRGFCPYTF TSSNPIFFLR FSSHFPFART RVKRSTTLGR KRRGSMSNSN ITSCDSWSFS 60 TENTGEDAAA AVKHQQLEML PQNHSPNSNT STTTNNSNAS NTNSQPPLKK KRNLPGNPDP 120 NAEVVALSPN TLVATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKLRT TTEVKKRVYV 180 CPEPSCVHHN PARALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVHSDWK AHSKICGTKE 240 YKCDCGTIFS RRDSFITHRA FCDALSDDSN KFNEAGQLQS IMHASNLQPP MIPNLAASLP 300 INTNNHKQPL PLPHDLIAAI PAKPFSSNMA ALPRSLSSTS SLSQLCSNSP HINMFEEKPQ 360 TNMSATALLQ KAAQMGATVN SNSNGMMTET GFATSMAPPS YGVMNHHIHH GQQDLSQYNF 420 HANGTVMMDG VGNGMGGMSG LDMFNAILDQ SKALSKIIEQ NNRSSYSGVL HAMNNGRSSS 480 IDVGGAKGSE DVMTLDLLGI GGGVGGGGGG DGSFFGGEQS ELKIEYGEMS QIRIQALNHF 540 QQQTAAYEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-32 | 210 | 268 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 7e-32 | 210 | 268 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g11710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435192.1 | 0.0 | PREDICTED: protein indeterminate-domain 2 | ||||
TrEMBL | A0A0L9VDV7 | 0.0 | A0A0L9VDV7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S5H6 | 0.0 | A0A0S3S5H6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147037.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 2e-96 | C2H2 family protein |