PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g11440.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 581aa    MW: 65922.6 Da    PI: 4.9865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g11440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.31e-5561331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv++yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v 
  Vang03g11440.1   6 LPPGFRFHPTDEELVSYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVN 99 
                     79****************************.99***************6434445667************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s ++ ++g+kktLv+y+grap+g +t Wvmheyrl
  Vang03g11440.1 100 S-QSCAIGMKKTLVYYRGRAPHGCRTGWVMHEYRL 133
                     9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-654156IPR003441NAC domain
PROSITE profilePS5100561.2056156IPR003441NAC domain
PfamPF023652.8E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPGK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QSCAIGMKKT LVYYRGRAPH  120
GCRTGWVMHE YRLDETQCET NTGLQDAYAL CRVFKKTTVI PPKVGDQHYV NVTTSHANQI  180
IASDQSSSIN ELYSEGRGEV LESSNYFMSL DACPSSNINV NTFNINGGRR DNETTWSHFL  240
SEDLLNLPTT STSSFPNYGS MSYPPSKVDV ALECARMQHR FSMPPLQMQD LEFPQVGISK  300
LKMAQGSSSM SGTRNETDIL QEILSVAHAS QELINQSNYS SQPFMNANEN YAPHESDFTF  360
MVGTNYNHVN DMNTMGFVDK AWEDQNTRSI EIGDLDDGFK TDNLRWVGMS SKNVGKSFME  420
EQQNIVPIDD ISNFQTNTEE NEMKVGFEKH SCNKEITDTE IDEFSMGFMN DEDPNENFLN  480
EENIDYSNST NFDVVEETKT NHGMFVSTHQ VADTFFHQVA PSQTLKVQLN PVMAGNECIE  540
NARVSEGLSF FRKFKAYISI FLTISLALFT MWANHIIVHS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-57115815170NAC domain-containing protein 19
3swm_B3e-57115815170NAC domain-containing protein 19
3swm_C3e-57115815170NAC domain-containing protein 19
3swm_D3e-57115815170NAC domain-containing protein 19
3swp_A3e-57115815170NAC domain-containing protein 19
3swp_B3e-57115815170NAC domain-containing protein 19
3swp_C3e-57115815170NAC domain-containing protein 19
3swp_D3e-57115815170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g11440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435571.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
TrEMBLA0A0S3S5M30.0A0A0S3S5M3_PHAAN; Uncharacterized protein
STRINGXP_007146987.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-156NAC domain containing protein 28