PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g11220.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Protein Properties

Length: 918aa MW: 101649 Da PI: 6.8547

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g11220.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.6	1.6e-20	343	443	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++ e++ l+++d +g++W++++++ +++s++yvl+ G +a +L++gD+v+F++++ +++ Vang03g11220.1 343 FEKVLSASDAGRIGRLVLPKACAEAYfpSISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLRAGDTVTFSRID-PGGK 435 99************************777789999***********99899999999.*******************987.8998 PP .EEEEE-S CS B3 92 lvvkvfrk 99 lv++++r+ Vang03g11220.1 436 LVMGFRRA 443 99999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.8E-31	339	453	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.53E-24	341	442	No hit	No description
SuperFamily	SSF101936	1.83E-20	341	442	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.5E-23	343	444	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-17	343	443	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.138	343	444	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.17	605	655	IPR011124	Zinc finger, CW-type
Pfam	PF07496	2.2E-10	610	652	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
LDFVLMGSDI CVVNGSCTHE WRKGWLLRSG GFAQLCCKCG FMEEWKGDIH EPLSAYENSV 60 FCSKFHHQQT GWRECNFCNK PIHCGCMVSR SLFEHLDFGG IGCVSCVNTS QLSTMRNIEN 120 PNGPVSLKKN NSSDRPSRSE GRLFARGVDE GKLMQFCKII EASESSRWNN AQKDGTISRH 180 GHNNQEAKCS FGEGDIGFSN VVKPSVQSLT FATLENNRSP WEIKNIHEAN VQPSLSMYLG 240 NASGKNSVLP SAGEAVEGRL EGKTSPPFHQ GQRSRPIFPK PVKSGLTMNV EIDKGTISQS 300 RVARPPADGR GKNQLLPRYW PRITDQELER LSGDLKSTVV PLFEKVLSAS DAGRIGRLVL 360 PKACAEAYFP SISQSEGVPL RMQDVKGNEW TFQFRFWPNN NSRMYVLEGV TPCIQAMQLR 420 AGDTVTFSRI DPGGKLVMGF RRASNSADTQ ETSTSAQSNS AKGATSAGTE NLPSGSNNAN 480 LLLSMKGNVE TNFNGQREHP LLATGTSGLL ITETNGIMTN NTSLQRKVSV SEKKKTRNIG 540 PKSKRLLIDN EDARELKLTW EEAQDLLRPP PSVKPSIVTI EDQVFEEYDE PPVFGKRTIF 600 STCSSGVKEQ WAQCDDCSKW RKLPVDALLP ANWTCFDNAW DSRRCSCTVP EELSSGELES 660 LLKTDKDFKK RRSDEKSMSI QEHMASGLEA LASAAALGDN LVDTAESSAG ATTKHPRHRP 720 GCSCIVCIQP PSGKGRHKPT CACNVCLTVK RRFKTLMLRK KKRQSEREAE AAQKDQVLPK 780 EESDTNETSR DDATQLEKEV VGLSRSQAEV GESSAAGQID LNSDPNREDM VVDLSAIFFC 840 ESDPTAEHEY MNQNDPRSYT NELQNGENSS LHTPQSNGEG QRHFSDLRSF ASIMWNQERR 900 DEEDSEPNQN QNQNNLC*

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

LDFVLMGSDI CVVNGSCTHE WRKGWLLRSG GFAQLCCKCG FMEEWKGDIH EPLSAYENSV  60
FCSKFHHQQT GWRECNFCNK PIHCGCMVSR SLFEHLDFGG IGCVSCVNTS QLSTMRNIEN  120
PNGPVSLKKN NSSDRPSRSE GRLFARGVDE GKLMQFCKII EASESSRWNN AQKDGTISRH  180
GHNNQEAKCS FGEGDIGFSN VVKPSVQSLT FATLENNRSP WEIKNIHEAN VQPSLSMYLG  240
NASGKNSVLP SAGEAVEGRL EGKTSPPFHQ GQRSRPIFPK PVKSGLTMNV EIDKGTISQS  300
RVARPPADGR GKNQLLPRYW PRITDQELER LSGDLKSTVV PLFEKVLSAS DAGRIGRLVL  360
PKACAEAYFP SISQSEGVPL RMQDVKGNEW TFQFRFWPNN NSRMYVLEGV TPCIQAMQLR  420
AGDTVTFSRI DPGGKLVMGF RRASNSADTQ ETSTSAQSNS AKGATSAGTE NLPSGSNNAN  480
LLLSMKGNVE TNFNGQREHP LLATGTSGLL ITETNGIMTN NTSLQRKVSV SEKKKTRNIG  540
PKSKRLLIDN EDARELKLTW EEAQDLLRPP PSVKPSIVTI EDQVFEEYDE PPVFGKRTIF  600
STCSSGVKEQ WAQCDDCSKW RKLPVDALLP ANWTCFDNAW DSRRCSCTVP EELSSGELES  660
LLKTDKDFKK RRSDEKSMSI QEHMASGLEA LASAAALGDN LVDTAESSAG ATTKHPRHRP  720
GCSCIVCIQP PSGKGRHKPT CACNVCLTVK RRFKTLMLRK KKRQSEREAE AAQKDQVLPK  780
EESDTNETSR DDATQLEKEV VGLSRSQAEV GESSAAGQID LNSDPNREDM VVDLSAIFFC  840
ESDPTAEHEY MNQNDPRSYT NELQNGENSS LHTPQSNGEG QRHFSDLRSF ASIMWNQERR  900
DEEDSEPNQN QNQNNLC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-68	321	450	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	749	760	KRRFKTLMLRKK
2	749	762	KRRFKTLMLRKKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g11220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434874.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1
Refseq	XP_017434875.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1
Refseq	XP_017434876.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1
Refseq	XP_017434877.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1
TrEMBL	A0A0S3S5V7	0.0	A0A0S3S5V7_PHAAN; Uncharacterized protein
STRING	XP_007146893.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	high-level expression of sugar-inducible gene 2