PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g11160.1 | ||||||||
Common Name | LR48_Vigan09g138800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30576.1 Da PI: 6.4027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.1 | 1.7e-21 | 126 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +grW AeIrdp++ rkr++lg+f+taeeAa+ +++a+ kl+g Vang03g11160.1 126 KFRGVRQRP-WGRWTAEIRDPTQ---RKRVWLGTFDTAEEAAAVYDEAAVKLKG 175 89*******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.6E-69 | 21 | 274 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Pfam | PF00847 | 1.5E-13 | 126 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 126 | 184 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-31 | 126 | 184 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.58E-34 | 126 | 185 | No hit | No description |
PROSITE profile | PS51032 | 24.039 | 126 | 183 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-38 | 126 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MSDTNQPFMS LQPTMNLSHP FNPPTSSSNF YTHPPCKPPK NPQPPHKKLL RVILTDHDAT 60 DSESSGDDDG PKSPSKHKKV KREITHITIN FPFIPEPPTI TPSFSTNPTP FTQPEKRPAA 120 PRRRNKFRGV RQRPWGRWTA EIRDPTQRKR VWLGTFDTAE EAAAVYDEAA VKLKGPDAVT 180 NFPVAANGKR ELHVSPPEAA CSGDGFASPT SVLTYCDGDS SPFDGFRYGE VDAFGFDIDA 240 PFSLTDVNMG VLNQRYAKEE FGEFDPDEFL TWPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 127 | 187 | 6 | 67 | ATERF1 |
3gcc_A | 2e-19 | 127 | 187 | 6 | 67 | ATERF1 |
5wx9_A | 5e-19 | 125 | 183 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g11160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434886.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 8e-50 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A0L9VDI0 | 0.0 | A0A0L9VDI0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S5U5 | 0.0 | A0A0S3S5U5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146901.1 | 1e-132 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-23 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
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