PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g10630.1
Common NameLR48_Vigan10g152900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 367aa    MW: 40250 Da    PI: 9.3444
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g10630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.32.6e-16181236358
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+l   +  + +
  Vang03g10630.1 181 DAKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRGENSSLLKRLTDVNHRYNS 236
                     689*****************************************999887776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.1E-13178232No hitNo description
SMARTSM003383.0E-20179243IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.415181231IPR004827Basic-leucine zipper domain
PfamPF001702.7E-14182233IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.15E-12183233No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF124986.1E-31250359IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MERVLSVDEI SEQYWVAAKK ESCKSKSKMN RSESEWAFQQ FLQEAVSPSS SSSSDVKPKK  60
DPDINMNIPV TLNVDSHDYQ SILKTKLNLA CAAVALTRGS LVKSQNPTTF PDSGSQAAVP  120
SEVGTLKDVE AATGISFSSP SLQKKPAVAM RPTLSASSRE QSDDEEAEEE INMTGKMNTT  180
DAKRVRRMLS NRESARRSRR RKQAHLSELE TQVSQLRGEN SSLLKRLTDV NHRYNSAAVD  240
NRVLKADVET LRAKVKMAEE TVKRISGLNP MFHAMTEMSS MEIAMFDESR SETSGGGAVP  300
VQEDTNHKLS EASSKNGFGG ISSVKSVQQK VVGWNKSGGG NSLHRVASLE HLQKRIRGDE  360
DSRGEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195202RRSRRRKQ
2197202SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g10630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438629.10.0PREDICTED: light-inducible protein CPRF2 isoform X1
SwissprotQ990907e-90CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0L9VL600.0A0A0L9VL60_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S5A30.0A0A0S3S5A3_PHAAN; Uncharacterized protein
STRINGXP_007147170.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-62bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]