PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang03g10630.1 | ||||||||
Common Name | LR48_Vigan10g152900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 367aa MW: 40250 Da PI: 9.3444 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 51.3 | 2.6e-16 | 181 | 236 | 3 | 58 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+l + + + Vang03g10630.1 181 DAKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRGENSSLLKRLTDVNHRYNS 236 689*****************************************999887776665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.1E-13 | 178 | 232 | No hit | No description |
SMART | SM00338 | 3.0E-20 | 179 | 243 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.415 | 181 | 231 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-14 | 182 | 233 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.15E-12 | 183 | 233 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 186 | 201 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 6.1E-31 | 250 | 359 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MERVLSVDEI SEQYWVAAKK ESCKSKSKMN RSESEWAFQQ FLQEAVSPSS SSSSDVKPKK 60 DPDINMNIPV TLNVDSHDYQ SILKTKLNLA CAAVALTRGS LVKSQNPTTF PDSGSQAAVP 120 SEVGTLKDVE AATGISFSSP SLQKKPAVAM RPTLSASSRE QSDDEEAEEE INMTGKMNTT 180 DAKRVRRMLS NRESARRSRR RKQAHLSELE TQVSQLRGEN SSLLKRLTDV NHRYNSAAVD 240 NRVLKADVET LRAKVKMAEE TVKRISGLNP MFHAMTEMSS MEIAMFDESR SETSGGGAVP 300 VQEDTNHKLS EASSKNGFGG ISSVKSVQQK VVGWNKSGGG NSLHRVASLE HLQKRIRGDE 360 DSRGEQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 195 | 202 | RRSRRRKQ |
2 | 197 | 202 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang03g10630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438629.1 | 0.0 | PREDICTED: light-inducible protein CPRF2 isoform X1 | ||||
Swissprot | Q99090 | 7e-90 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A0L9VL60 | 0.0 | A0A0L9VL60_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S5A3 | 0.0 | A0A0S3S5A3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147170.1 | 1e-179 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4176 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28770.2 | 1e-62 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|