PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g10380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 414aa MW: 45656.6 Da PI: 4.9082 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 5.8e-34 | 201 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ Vang03g10380.1 201 KTRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRT 255 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.504 | 198 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-18 | 199 | 255 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-32 | 199 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-25 | 201 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-10 | 203 | 254 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.9E-21 | 288 | 332 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MSSSSRVLPT PLENKYMKPP DSCHLSPASD LAANSVSSNL ITSAGKIISS PSEYPDGTPF 60 PYASQHDRQN EDLPFVSQTL GDNVSSEIHS TTFISHPHES TDITWGPDPF QDILGFPENI 120 SAQHDQVVDN ACYINDENVK RTDFGEWVDQ LMSIDDSLHP NWSQLLGDDN AAEPKPKVPQ 180 LLDIPSGEVN GNSAATTPQT KTRMRWTPEL HEAFVEAVNQ LGGSEKATPK GVLNLMKVDG 240 LTIYHVKSHL QKYRTARYKP EPSEGTSEKK TTPIEEMNSL DLKTSKGITE ALRLQMDLQK 300 RLHEQLEIQR KLQIQIEDQG KRLQMMFEKQ REMGGKKVNG SSGEAAAATA TTATPSDNVH 360 PSSPPVETSN EGHEKMMHEE KNGSTKQKTS EGEEVMNEDE DEIAPATKRV KSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-30 | 201 | 259 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-30 | 201 | 259 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-30 | 201 | 259 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-30 | 201 | 259 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-30 | 201 | 259 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-30 | 201 | 259 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-30 | 201 | 259 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-30 | 201 | 259 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g10380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN201527 | 0.0 | JN201527.1 Glycine max PHR2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017440383.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A0S3S505 | 0.0 | A0A0S3S505_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147208.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 1e-90 | G2-like family protein |