PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang03g10200.4 | ||||||||
Common Name | LR48_Vigan10g157600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19605.2 Da PI: 6.5238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.2e-20 | 40 | 89 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a+++++g Vang03g10200.4 40 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAALAMRG 89 9*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-14 | 39 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-36 | 39 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.42 | 39 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 39 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 40 | 51 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-19 | 40 | 98 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-23 | 40 | 99 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-11 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MLLYQLLAQP AAPSSHSITS SLSSLSHGSS VAEAEVSVSY RGVRRRPWGK YAAEIRDSTR 60 NGVRVWLGTF DTAEAAALAY DQAALAMRGS MAVLNFPAEM VWQSLRKMEY GFDQGCSPVL 120 ELKKRHSINR KWERNKLKNK VQEEEEEGVS QNVMVLEDLG AEYLEHLLTV SQDMI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-28 | 40 | 99 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang03g10200.4 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439481.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 2e-57 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A0L9VLR5 | 1e-126 | A0A0L9VLR5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147223.1 | 7e-87 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-43 | ethylene response factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|