PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g10200.2 | ||||||||
Common Name | LR48_Vigan10g157600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 94aa MW: 10550.2 Da PI: 5.0906 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.2 | 3.7e-07 | 1 | 23 | 33 | 55 |
AP2 33 lgkfgtaeeAakaaiaarkkleg 55 lg+f+tae Aa a+++a+++++g Vang03g10200.2 1 LGTFDTAEAAALAYDQAALAMRG 23 7********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.0E-4 | 1 | 37 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-9 | 1 | 33 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-13 | 1 | 32 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.996 | 1 | 31 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
LGTFDTAEAA ALAYDQAALA MRGSMAVLNF PAEMVWQSLR KMEYGFDQGC SPVLELKKRH 60 SINRKWERNK VMVLEDLGAE YLEHLLTVSQ DMI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g10200.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-113 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491591.1 | 5e-50 | ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 3e-34 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S3TCU7 | 1e-48 | A0A1S3TCU7_VIGRR; ethylene-responsive transcription factor 1B | ||||
STRING | XP_007147223.1 | 9e-44 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-20 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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