PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g09900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 554aa MW: 60130.7 Da PI: 6.649 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.8 | 1e-22 | 407 | 469 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L +eN +Lk+e+++l++ ++k++ e+ Vang03g09900.1 407 ERELKRERRKQSNRESARRSRLRKQAETEELARKVDSLNSENGTLKSEINRLTESSEKMRVEN 469 89*********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.7E-34 | 95 | 190 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 8.7E-17 | 225 | 295 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-16 | 401 | 466 | No hit | No description |
SMART | SM00338 | 2.9E-21 | 407 | 471 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.9E-20 | 407 | 469 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.185 | 409 | 472 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-11 | 410 | 465 | No hit | No description |
CDD | cd14702 | 8.30E-22 | 412 | 460 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 414 | 429 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
VDFAFALLPS LLVTTTIPHL CVKAHCCFPR FLERENAHSK LIVSPYLDPF FGYLELPGVF 60 SPCVFMVFLA RCFVGEDNIW PIGYLVSALY LECTMGNNEE EKSTKTEKPS SPATMDQANQ 120 TNQPNIHVYP DWAAMQAYYG QRVTMPPYYN SAVASGHAPH PYMWGPPQPM MPPYGPPYAA 180 IYSHGGVYPA VPIGPHTHSQ GVPSSPAAVT PLSIETPPKS SGNNDQGLMK KLKEFDGLAM 240 SIGNGHAESA ERGGENRLSP SVDTEGSSDG SDDNTSGANQ TRRKRSRGGT PTTGEIAEVF 300 ILAISLVNVV WGIGVSWLQI TIVVEMSYKP KCVILTDGEG KTEIQSSPIS KDTAASNKIV 360 AVAPASVAGT IVGPVVSSGM TTVLELRNPS SVHSKANTTS APQPSNEREL KRERRKQSNR 420 ESARRSRLRK QAETEELARK VDSLNSENGT LKSEINRLTE SSEKMRVENA TLREKLKIAR 480 LGQTQEITLN IIDSERATPV STENLLSRVN NNSSSNDRTM EDENDFCENK PNSGAKLHQL 540 LDTSPRADAV AAG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 423 | 429 | RRSRLRK |
2 | 423 | 430 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g09900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031145 | 0.0 | KT031145.1 Glycine max clone HN_CCL_210 BZIP transcription factor (Glyma19g44190.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491552.1 | 0.0 | common plant regulatory factor 1-like isoform X4 | ||||
Refseq | XP_014491555.1 | 0.0 | common plant regulatory factor 1-like isoform X5 | ||||
Swissprot | Q99089 | 1e-124 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A1S3TCP8 | 0.0 | A0A1S3TCP8_VIGRR; common plant regulatory factor 1-like isoform X4 | ||||
TrEMBL | A0A1S3TCR8 | 0.0 | A0A1S3TCR8_VIGRR; common plant regulatory factor 1-like isoform X5 | ||||
STRING | GLYMA03G41590.5 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5301 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 2e-78 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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