PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g09660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 909aa MW: 100435 Da PI: 6.01 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.2e-23 | 197 | 298 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ Vang03g09660.1 197 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WNE 287 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ Vang03g09660.1 288 KNQLLLGIRRA 298 9999****997 PP | |||||||
2 | Auxin_resp | 118.7 | 4.5e-39 | 323 | 406 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Vang03g09660.1 323 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 406 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-49 | 181 | 326 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-41 | 190 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.40E-21 | 196 | 297 | No hit | No description |
PROSITE profile | PS50863 | 12.308 | 197 | 299 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-24 | 197 | 299 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-21 | 197 | 298 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-34 | 323 | 406 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.48E-7 | 777 | 856 | No hit | No description |
Pfam | PF02309 | 3.2E-7 | 779 | 866 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.037 | 782 | 866 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 909 aa Download sequence Send to blast |
FHGDLGERAT VAAVHSNWIV GFYVRTLWSE CIGIMLEDEG VVGDACLCNG LKQIEASGFE 60 LGFHVKLDDM KLSTSGLGQQ GLEVGEKKCL NSELWHACAG PLVSLPTAGT RVVYFPQGHS 120 EQVAATTNRE IDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT 180 FLPMELGIPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR 240 DLHDVEWKFR HIFRGQPKRH LLTTGWSIFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR 300 PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYIKAVYHT 360 RISVGMRFRM LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR 420 VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG SSSLHDGRDE ASNGLMWLRG GAVDQGLNSL 480 NFQGAGMLPW MQQRMDPTLL GSDQNQQYQA MLAAGLQNLG SGYLMKQQMM NFQQPFHYLQ 540 QSGNSNSPLQ LQSQQSVQQS VSSNMLQPQA HVLTENLSQH LLQKPHNNQE VQAQQQQHSY 600 QESLLIPSDQ LHQRQHSGVP SPSYSKPDFL DSSMKFPVSV SPGQNMLSSL CPEGSGNLLN 660 LSRSAPSLLS EQQWTQKYAP VQVNAYGSTV SQTQYSGKDS AMVLPHLNSD AQNSTLFGVN 720 IDSSGLLLPT TVPGYSTSSA DTNSSTMPLG ESGFQGSLFG CMQDSSELLQ SAGHVDPQNQ 780 TQTFVKVYKS GSVGRSLDIS RFSSYHELRE ELAQMFGIEG KLEDPPRSGW QLVFVDREND 840 VLLLGDDPWE SFVNNVWYIK ILSPEDIQKM GEQAVESLAL GSGQRLNGTG AESQDIVSGP 900 PSIGSLEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 67 | 427 | 34 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g09660.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017436621.1 | 0.0 | PREDICTED: auxin response factor 8 isoform X1 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A371HRA9 | 0.0 | A0A371HRA9_MUCPR; Auxin response factor (Fragment) | ||||
STRING | XP_007146950.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |