PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g09410.2
Common NameLR48_Vigan09g164200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 737aa    MW: 81749.4 Da    PI: 6.5531
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g09410.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.1e-22154254198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt sd++++g +++ +++a+e+       + +++  ++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +
  Vang03g09410.2 154 FSKILTASDTSTHGGFSVLRRHATEClppldmtQTIPT--QELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGE 244
                     889***************************96654544..48************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  Vang03g09410.2 245 NGELRVGVRR 254
                     999*****98 PP
2Auxin_resp97.32.3e-32280358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t+++F v+Y+Pr+  s+F++ ++k+++a+ +k+svGmRfkm+fe eds+err+sGt+vgv d++p  W+nS+WrsLk
  Vang03g09410.2 280 ASHAFLTSTMFVVYYKPRT--SQFIIGLNKYLEAV-NKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSP-GWRNSQWRSLK 358
                     679999************6..9*************.89*********************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.02E-40145283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-38147269IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-19152254No hitNo description
PfamPF023621.7E-20154254IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984154256IPR003340B3 DNA binding domain
SMARTSM010191.0E-21154256IPR003340B3 DNA binding domain
PfamPF065076.6E-29280358IPR010525Auxin response factor
PfamPF023097.7E-6602650IPR033389AUX/IAA domain
SuperFamilySSF542771.24E-12611690No hitNo description
PROSITE profilePS5174523.537614695IPR000270PB1 domain
PfamPF023094.6E-5658697IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MAHLEAPVRT VSTSQPETGQ WLMLRGDFLD LALLGCLESV GDGDLYTQLW KLCAGPLVDV  60
PCEGERVFYF PQGHMEQLQA STNQGPNQEL SQQIPHFNLP SKILCRVVHI QLLAEQETDE  120
VYARITLLPQ SNQEEPTSPD PSPPETQKQS FHSFSKILTA SDTSTHGGFS VLRRHATECL  180
PPLDMTQTIP TQELAAKDLH GFEWKFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF  240
LRGENGELRV GVRRVARQQS PMPSSVISSQ SMHLGVLATA SHAFLTSTMF VVYYKPRTSQ  300
FIIGLNKYLE AVNKFSVGMR FKMRFEVEDS PERRFSGTIV GVGDVSPGWR NSQWRSLKVQ  360
WDEPAIIPRP ERVSSWEIEP FVASTALNVT QPVVKSKRSR PEVSSSEIGP NSPGAGLWYH  420
GPSLSHDPTA LGGTSEVQSN ESPVIWCTRM KEINVNPMNG NKSSSSRVRV EGMWPSSPHL  480
SVSSNLFPDP KNSKAVTAQS TVSGYAPVSS RPNDDLAHDP VECGKRSENP MDCWVFGVNL  540
TNNFTNVALP DKELGCPPII IPSGPKDSIP VAACETQPGQ NHNYSLSNKL QKQIISDGSP  600
SERHAKQTTV PSTRTRTKVQ MQGVAVGRAV DLTVLKDYEA LVDELEKIFD IKGELRMQTK  660
WVITFTDDEN DMMLAGDDPW PEFCSMAKRI FICSREDVKK LKSKHSGCSS EGEETLLSQD  720
SQNREETQQI SCDLTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1644538119355Auxin response factor 1
4ldw_A1e-1644538119355Auxin response factor 1
4ldw_B1e-1644538119355Auxin response factor 1
4ldx_A1e-1644538119355Auxin response factor 1
4ldx_B1e-1644538119355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g09410.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436807.10.0PREDICTED: auxin response factor 18-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0L9VDB10.0A0A0L9VDB1_PHAAN; Auxin response factor
STRINGXP_007147325.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]