PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g09410.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 761aa    MW: 85056.6 Da    PI: 7.6594
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g09410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22178278198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt sd++++g +++ +++a+e+       + +++  ++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +
  Vang03g09410.1 178 FSKILTASDTSTHGGFSVLRRHATEClppldmtQTIPT--QELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGE 268
                     889***************************96654544..48************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  Vang03g09410.1 269 NGELRVGVRR 278
                     999*****98 PP
2Auxin_resp97.22.4e-32304382183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t+++F v+Y+Pr+  s+F++ ++k+++a+ +k+svGmRfkm+fe eds+err+sGt+vgv d++p  W+nS+WrsLk
  Vang03g09410.1 304 ASHAFLTSTMFVVYYKPRT--SQFIIGLNKYLEAV-NKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSP-GWRNSQWRSLK 382
                     679999************6..9*************.89*********************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-40169307IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-38171293IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-19176278No hitNo description
PROSITE profilePS5086311.984178280IPR003340B3 DNA binding domain
SMARTSM010191.0E-21178280IPR003340B3 DNA binding domain
PfamPF023621.8E-20178278IPR003340B3 DNA binding domain
PfamPF065076.8E-29304382IPR010525Auxin response factor
PfamPF023098.0E-6626674IPR033389AUX/IAA domain
SuperFamilySSF542771.31E-12635714No hitNo description
PROSITE profilePS5174523.537638719IPR000270PB1 domain
PfamPF023094.8E-5682721IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MMANEFHFMR TIYTFASLSL LPLRRRFEWH IWKLLLELCP LLSQKQVNGL CFCFGRRVKG  60
RSCVGDGDLY TQLWKLCAGP LVDVPCEGER VFYFPQGHME QLQASTNQGP NQELSQQIPH  120
FNLPSKILCR VVHIQLLAEQ ETDEVYARIT LLPQSNQEEP TSPDPSPPET QKQSFHSFSK  180
ILTASDTSTH GGFSVLRRHA TECLPPLDMT QTIPTQELAA KDLHGFEWKF KHIFRGQPRR  240
HLLTTGWSTF VTSKRLVAGD AFVFLRGENG ELRVGVRRVA RQQSPMPSSV ISSQSMHLGV  300
LATASHAFLT STMFVVYYKP RTSQFIIGLN KYLEAVNKFS VGMRFKMRFE VEDSPERRFS  360
GTIVGVGDVS PGWRNSQWRS LKVQWDEPAI IPRPERVSSW EIEPFVASTA LNVTQPVVKS  420
KRSRPEVSSS EIGPNSPGAG LWYHGPSLSH DPTALGGTSE VQSNESPVIW CTRMKEINVN  480
PMNGNKSSSS RVRVEGMWPS SPHLSVSSNL FPDPKNSKAV TAQSTVSGYA PVSSRPNDDL  540
AHDPVECGKR SENPMDCWVF GVNLTNNFTN VALPDKELGC PPIIIPSGPK DSIPVAACET  600
QPGQNHNYSL SNKLQKQIIS DGSPSERHAK QTTVPSTRTR TKVQMQGVAV GRAVDLTVLK  660
DYEALVDELE KIFDIKGELR MQTKWVITFT DDENDMMLAG DDPWPEFCSM AKRIFICSRE  720
DVKKLKSKHS GCSSEGEETL LSQDSQNREE TQQISCDLTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1646940519355Auxin response factor 1
4ldw_A1e-1646940519355Auxin response factor 1
4ldw_B1e-1646940519355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g09410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436807.10.0PREDICTED: auxin response factor 18-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0S3S4T50.0A0A0S3S4T5_PHAAN; Auxin response factor
STRINGXP_007147325.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9