PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g09300.1 | ||||||||
Common Name | LR48_Vigan09g164600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18572.2 Da PI: 5.0717 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.3e-39 | 16 | 114 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++lrr+C ++C lapyfp ++ ++fa+vh++FGa+nv+k++++++e +r da++s+vyeA ar+rdPvyG++gvi +lq+ +e+lka+l+ Vang03g09300.1 16 PCAACRMLRRRCDSKCELAPYFPTDEVENFAVVHRVFGARNVIKMIQTVEEAKRGDAVKSMVYEATARLRDPVYGSAGVIYELQKMIEELKAQLD 110 7********************************************************************************************99 PP DUF260 96 llke 99 ++++ Vang03g09300.1 111 SIRT 114 8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.934 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-39 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAFHADEAKT SMQHQPCAAC RMLRRRCDSK CELAPYFPTD EVENFAVVHR VFGARNVIKM 60 IQTVEEAKRG DAVKSMVYEA TARLRDPVYG SAGVIYELQK MIEELKAQLD SIRTRMSEMR 120 EEKEQLLSIG NNYDPMFDSA MTSDPFDFPV EGGWLYSNIS TPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-32 | 16 | 116 | 11 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-32 | 16 | 116 | 11 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g09300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-172 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434724.1 | 1e-121 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-42 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0L9VDK1 | 1e-120 | A0A0L9VDK1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S4S8 | 1e-120 | A0A0S3S4S8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147329.1 | 1e-97 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14068 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-45 | LOB domain-containing protein 1 |
Publications ? help Back to Top | |||
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