PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang03g07860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 257aa MW: 28499.5 Da PI: 8.9416 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 137.2 | 4.6e-43 | 84 | 183 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 +ksfw++q ie++td++ +h++Pl+r+kki+k+d dvk +saeaPv+++kacelfi+elt+++w +ae+n+r+t+kksd+a+a++rtd+fdfl Vang03g07860.1 84 VKSFWAQQlkeIEESTDLRiQHRIPLSRVKKIMKSDADVKLVSAEAPVVFAKACELFIMELTMKAWANAEDNNRSTIKKSDVASAIARTDVFDFL 178 799***9998899*****99*************************************************************************** PP NF-YC 93 vdivp 97 di p Vang03g07860.1 179 EDIAP 183 **987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.4E-27 | 56 | 178 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-18 | 106 | 169 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.3E-32 | 108 | 183 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MKINLNSIRA ASMEQNQHGQ PGRGIGSAPA QEAHNKNQYQ SKPTNPPIQT VGPSVPSPYP 60 GENHYALRSM DRQQQQQDQL EEKVKSFWAQ QLKEIEESTD LRIQHRIPLS RVKKIMKSDA 120 DVKLVSAEAP VVFAKACELF IMELTMKAWA NAEDNNRSTI KKSDVASAIA RTDVFDFLED 180 IAPIPRVHKN TMMHPLLPGN APTPTENVPH MPPPQHVASP PPPYVAAEIP HALQIYPLVP 240 SSTVPPQSAK PFSYFR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-38 | 91 | 183 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang03g07860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412816.1 | 1e-151 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
TrEMBL | A0A0L9TTU5 | 1e-150 | A0A0L9TTU5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147757.1 | 2e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20696 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-43 | nuclear factor Y, subunit C2 |