PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g07820.1 | ||||||||
Common Name | LR48_Vigan02g009300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YC | ||||||||
Protein Properties | Length: 244aa MW: 26706.6 Da PI: 4.718 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 154.1 | 2.5e-48 | 55 | 158 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql +fw+kq +e++++ knh lPlarik+i+k+dedv+m+saeaPvll+kace+fi+elt+r+w + eenkrrtl k+diaaa+++td++dfl Vang03g07820.1 55 QLSKFWAKQrqeVEETSESKNHCLPLARIKRIMKSDEDVRMVSAEAPVLLAKACEMFIMELTMRAWGNVEENKRRTLSKNDIAAAMSKTDMYDFL 149 7999***9988889999****************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr+++ Vang03g07820.1 150 VDIVPREDT 158 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.35E-30 | 61 | 149 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.1E-36 | 78 | 155 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-22 | 78 | 140 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDENKHDQAA KEGRGKSKVQ SEPKVEPPXS PPALTIGPSA SSSNPQTAKE SLEQQLSKFW 60 AKQRQEVEET SESKNHCLPL ARIKRIMKSD EDVRMVSAEA PVLLAKACEM FIMELTMRAW 120 GNVEENKRRT LSKNDIAAAM SKTDMYDFLV DIVPREDTRG PQVFXGIPGT PIPPTLSQIL 180 PNNPVPPHNQ HDAAGPQSGA PTMLMGVPLL DPTDPQQLQD QPSPTPVLPK PEEENNPSPD 240 SDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-48 | 63 | 155 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g07820.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414263.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 3e-53 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A0L9TTQ1 | 1e-174 | A0A0L9TTQ1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147755.1 | 1e-106 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 8e-54 | nuclear factor Y, subunit C2 |