PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g06890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 48671.7 Da PI: 8.5522 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.1 | 6.3e-26 | 151 | 200 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv++ve+LG AtPk +l+lm+v+gL+++hvkSHLQ+YR+ Vang03g06890.1 151 PRLRWTPELHHSFVHVVERLG----ATPKLVLQLMNVQGLSIAHVKSHLQMYRS 200 8*******************5....9***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.343 | 147 | 203 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-26 | 147 | 201 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-12 | 149 | 201 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-18 | 151 | 202 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-9 | 152 | 199 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
LEMTDFKICL DMHHLLLRLG RERHRLLRCS SCPPLAADLK FQLCKEREKS IGWTQKPVQQ 60 QVNMSEGHEI HNNEESSSGC SQKCSSFDLN AEACSDDNTN GNTEDGYELT TNENNVEKVN 120 DEGTSGNGSS ISREGNARRG TVRQYVRSKM PRLRWTPELH HSFVHVVERL GATPKLVLQL 180 MNVQGLSIAH VKSHLQMYRS KKLDEAGQVL SQTYKWNQNQ KLRRSVILHE SMNPQQHLKM 240 GNGGIILATQ FNNCHFPSLV DTPFPLSPSH TNDTDSRQQQ WYINHQTFRK SIASGHIQAK 300 DTTTRPSKLL EEKSWLPLEI ISNHQSKFQK LPATVAPKNY GSQAVQLAEW SFVNKTSVTE 360 YLSNKSNEPR NYSNSLKLQF DPPFRIKKDE QELPNLQLGL SYTIASDGDK MDHYKETQEI 420 STKLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-14 | 152 | 202 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-14 | 152 | 202 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-14 | 152 | 202 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-14 | 152 | 202 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-14 | 152 | 202 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-14 | 152 | 202 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-14 | 152 | 202 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-14 | 152 | 202 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-14 | 152 | 202 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-14 | 152 | 202 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-14 | 152 | 202 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-14 | 152 | 202 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g06890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435859.1 | 0.0 | PREDICTED: uncharacterized protein LOC108342580 | ||||
Refseq | XP_017435860.1 | 0.0 | PREDICTED: uncharacterized protein LOC108342580 | ||||
TrEMBL | A0A0L9VF43 | 0.0 | A0A0L9VF43_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148039.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-29 | G2-like family protein |