PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g06140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 110aa MW: 12006.5 Da PI: 10.5797 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 14 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g+ Vang03g06140.1 14 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 64 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.23E-28 | 14 | 73 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 14 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 14 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.56E-23 | 14 | 72 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-35 | 14 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 14 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MMASSSSSGS REGHYRGVRK RPWGRYAAEI RDPWKKTRVW LGTFDTPEEA ALAYDGAARS 60 LRGAKAKTNF PPSPALCLDL NAPSSDHRWP NEMIGSKQGD GNARRGKVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 14 | 71 | 5 | 63 | ATERF1 |
3gcc_A | 2e-22 | 14 | 71 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g06140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-152 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435349.1 | 4e-61 | PREDICTED: ethylene-responsive transcription factor 12 isoform X1 | ||||
Refseq | XP_017435350.1 | 4e-61 | PREDICTED: ethylene-responsive transcription factor 12 isoform X2 | ||||
Swissprot | Q94ID6 | 5e-39 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A0S3S2P9 | 1e-59 | A0A0S3S2P9_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA13G31010.1 | 4e-54 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-40 | ERF domain protein 12 |