PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g05590.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 356aa    MW: 39921.7 Da    PI: 9.5115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g05590.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.5e-53181451128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+k+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d+++l++
  Vang03g05590.1  18 LPPGFRFHPTDEELVVHYLKRKADSVPLPV-AIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDRPILTS 111
                     79****************************.88***************8888999*************************************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Vang03g05590.1 112 hGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 145
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-6410185IPR003441NAC domain
PROSITE profilePS5100561.43918185IPR003441NAC domain
PfamPF023657.2E-2819145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNSMASSSEY HTHQHPHLPP GFRFHPTDEE LVVHYLKRKA DSVPLPVAII AEVDLYKFDP  60
WELPSKATFG EQEWYFFSPR DRKYPNGARP NRAASSGYWK ATGTDRPILT SHGHHKVGVK  120
KALVFYGGKP PKGVKTNWIM HEYRLVGSSS NSSSKPPSLP ADHARSSKKN SLRLDDWVLC  180
RIYKKNNSTM MPRFPLMEQN KELSSESTML PMMSTSSMAN NNTTQNSKAG TSRSASYGPM  240
GLENDDSFFD GILGVDHSMQ QDVSDSHQVS SKGIYPVKRA LSSQFWNDTR SSSSSRRFHC  300
DLNAGSNTVE EESSFVSLLN HLPQNTTFHP NALLGPVSND VLRQQFQLPN MNWNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-731818917169NO APICAL MERISTEM PROTEIN
1ut4_B1e-731818917169NO APICAL MERISTEM PROTEIN
1ut7_A1e-731818917169NO APICAL MERISTEM PROTEIN
1ut7_B1e-731818917169NO APICAL MERISTEM PROTEIN
3swm_A1e-731818920172NAC domain-containing protein 19
3swm_B1e-731818920172NAC domain-containing protein 19
3swm_C1e-731818920172NAC domain-containing protein 19
3swm_D1e-731818920172NAC domain-containing protein 19
3swp_A1e-731818920172NAC domain-containing protein 19
3swp_B1e-731818920172NAC domain-containing protein 19
3swp_C1e-731818920172NAC domain-containing protein 19
3swp_D1e-731818920172NAC domain-containing protein 19
4dul_A1e-731818917169NAC domain-containing protein 19
4dul_B1e-731818917169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g05590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435083.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY421e-113NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0S3S2I50.0A0A0S3S2I5_PHAAN; Uncharacterized protein
STRINGXP_007148205.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-106NAC domain containing protein 25