PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g04890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GeBP | ||||||||
Protein Properties | Length: 394aa MW: 43277.4 Da PI: 10.1966 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 100.7 | 1.3e-31 | 144 | 243 | 1 | 98 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 k+fqrlwseeDe+++L+Gl +f++ktg +p + +af++f+kks++++v+++ql eK rrLKkK++ + +s + f+k+hdqk+felsk Vang03g04890.1 144 KKFQRLWSEEDELAILKGLAEFTSKTGNDPLKfaGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYEIAAVRENSADGLIFAKPHDQKTFELSK 238 68**************************88765599*************************************9********************* PP DUF573 94 kiWgs 98 k+Wgs Vang03g04890.1 239 KVWGS 243 ***95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-30 | 146 | 242 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MDRPPCSSFN SAAKARPPNY SPSRASPSKA DVTGGLSPMS LVALRSLNFY SLWGLEISTK 60 NRCFALVKVD FPLVDTAIGK CFNSGLWPKV LPSPAPPKPA VKRPADNSNA HVAKKKKKSG 120 DSSSSPAASD EEMEEGKKSG DQMKKFQRLW SEEDELAILK GLAEFTSKTG NDPLKFAGGN 180 AFHDFLKKSL HVEVTSNQLK EKARRLKKKY EIAAVRENSA DGLIFAKPHD QKTFELSKKV 240 WGSEQDGGVA NGAVEKPKAN GNAAKSPKKK ETGSRNVASA KKTKPEPKQE TVPATRMEFK 300 ESEKMHIDQK TVNCEVSMFL HALSHFKEGL GVCGLDEEDV KKGLELIGES KRTELRAKWK 360 KLQRTELELF ANRSELIGEQ TKLIVEALRS SNH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g04890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017436582.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A0L9VGR1 | 0.0 | A0A0L9VGR1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S2B4 | 0.0 | A0A0S3S2B4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148295.1 | 1e-158 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 2e-27 | DNA-binding storekeeper protein-related transcriptional regulator |