PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g04600.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 323aa MW: 36771.2 Da PI: 9.7144 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86 | 2.2e-27 | 52 | 101 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgkly+y+s Vang03g04600.3 52 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYAS 101 8***********************************************86 PP | |||||||
2 | K-box | 71.3 | 3e-24 | 123 | 224 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLq...........reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 + +++++ +q+e+a+L+ +++ Lq + R+l+Ge+L+ L +keLq+Le+qLe slk +R kK+++l+++i+el++k + ++++n Vang03g04600.3 123 NPASEEKFWQTEAANLRTQLQYLQechsisifvsfGNSRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNV 217 5678899*****************99888888888788********************************************************* PP K-box 93 aLrkkle 99 +L +k++ Vang03g04600.3 218 ELYQKMD 224 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-40 | 43 | 102 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.085 | 43 | 103 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.40E-44 | 44 | 119 | No hit | No description |
SuperFamily | SSF55455 | 1.26E-32 | 44 | 132 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 45 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-25 | 52 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 80 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-19 | 125 | 223 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.607 | 128 | 229 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MYNSIASCNS PRIRNIHLRK SCPSSPSLLC FSLITTHSHN FQMGRGKIAI RRIDNSTSRQ 60 VTFSKRRNGL LKKARELSIL CDAEVGLMVF SSTGKLYDYA STSMKSVFER YNKLKEEHHH 120 LMNPASEEKF WQTEAANLRT QLQYLQECHS ISIFVSFGNS RQLMGEELTG LGIKELQNLE 180 NQLEMSLKGV RMKKDQILTS EIKELRQKGN LIHQDNVELY QKMDQIQKEN AELQKKVFGS 240 RSTGEENVAS SPSYMVRNEY ELRPPISLQL SQPQTQYSEP SAKIAAALAK NCSVNGDLSF 300 CDKKQLLQLL PRMVRLSTSW VL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-22 | 43 | 123 | 1 | 81 | MEF2C |
5f28_B | 8e-22 | 43 | 123 | 1 | 81 | MEF2C |
5f28_C | 8e-22 | 43 | 123 | 1 | 81 | MEF2C |
5f28_D | 8e-22 | 43 | 123 | 1 | 81 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g04600.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096810 | 1e-135 | BT096810.1 Soybean clone JCVI-FLGm-25F18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017436232.1 | 1e-166 | PREDICTED: MADS-box transcription factor 23-like isoform X2 | ||||
Swissprot | Q6EP49 | 1e-88 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0S3S276 | 1e-165 | A0A0S3S276_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA13G32810.1 | 1e-143 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-89 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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