PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g04420.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 441aa MW: 51200.2 Da PI: 6.3017 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.8 | 7.8e-25 | 20 | 70 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqvtfskRr+g++KK +ELS+LCdae+a+i+fsst kl+ey+s Vang03g04420.2 20 KKIDNINARQVTFSKRRKGLFKKTQELSTLCDAEIALIVFSSTSKLFEYAS 70 689**********************************************86 PP | |||||||
2 | K-box | 29.4 | 3.3e-11 | 109 | 168 | 23 | 87 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 Lkk +++q + G+dL+ L+++eLq+Le+ L+k +i + K+e ++++i+ l+ k +++ Vang03g04420.2 109 HLKKSHDSIQLN-----GQDLQGLTIQELQKLEELLQKRWITISKIKEEKMTQEINSLKTKVNAH 168 555555665555.....********************************************8876 PP | |||||||
3 | K-box | 40.8 | 9.4e-15 | 378 | 439 | 22 | 83 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 a L+k++e re R+l Ge+Le L+lkeLq+Le++L++sl+++ + K +++l++i l +k Vang03g04420.2 378 ASLNKQLEDRSREMRQLNGEELEGLNLKELQKLEERLDSSLNSVYKAKVQIFLAEITILSQK 439 67899999999*********************************************988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.259 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-36 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-29 | 12 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.45E-36 | 13 | 89 | No hit | No description |
PRINTS | PR00404 | 6.3E-24 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 14 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-23 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-24 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-24 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.642 | 84 | 242 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.6E-7 | 118 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.643 | 370 | 440 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.6E-12 | 378 | 439 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
LDDYEIFFEC RMARKKIPIK KIDNINARQV TFSKRRKGLF KKTQELSTLC DAEIALIVFS 60 STSKLFEYAS SSMQQIIERR NQHSGVQGSD IASTGKQCCR FELCNSHCHL KKSHDSIQLN 120 GQDLQGLTIQ ELQKLEELLQ KRWITISKIK EEKMTQEINS LKTKVNAHTD CKSWNVNHFK 180 MAFNFKNHVL IKAACWQFFH LSLFTQPFFC NDIWQLTLLE KEAELTEENQ KLKQKLVREQ 240 CYESITSSSS DFPPDNGSSD TSLKLGSNRA RFSGLLDFDE NGEEEDTDQE DRGRNCEAGD 300 ILKEKEWPFE ESTMQKITER YILCSEWNLD KLDQSYPTEQ DFSRYPLIEY MLITFHVSKC 360 HFFSSVHLIC VVIVQGNASL NKQLEDRSRE MRQLNGEELE GLNLKELQKL EERLDSSLNS 420 VYKAKVQIFL AEITILSQKV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-18 | 12 | 92 | 1 | 85 | MEF2C |
5f28_B | 2e-18 | 12 | 92 | 1 | 85 | MEF2C |
5f28_C | 2e-18 | 12 | 92 | 1 | 85 | MEF2C |
5f28_D | 2e-18 | 12 | 92 | 1 | 85 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g04420.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-116 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435318.1 | 3e-95 | PREDICTED: MADS-box protein JOINTLESS-like isoform X1 | ||||
Refseq | XP_017435319.1 | 3e-95 | PREDICTED: MADS-box protein JOINTLESS-like isoform X1 | ||||
Refseq | XP_017435320.1 | 3e-95 | PREDICTED: MADS-box protein JOINTLESS-like isoform X1 | ||||
TrEMBL | A0A0S3S263 | 7e-94 | A0A0S3S263_PHAAN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-28 | MIKC_MADS family protein |