PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g04420.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 441aa    MW: 51200.2 Da    PI: 6.3017
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g04420.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.87.8e-252070151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr+g++KK +ELS+LCdae+a+i+fsst kl+ey+s
  Vang03g04420.2 20 KKIDNINARQVTFSKRRKGLFKKTQELSTLCDAEIALIVFSSTSKLFEYAS 70
                    689**********************************************86 PP

2K-box29.43.3e-111091682387
           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                      Lkk  +++q +     G+dL+ L+++eLq+Le+ L+k   +i + K+e ++++i+ l+ k +++
  Vang03g04420.2 109 HLKKSHDSIQLN-----GQDLQGLTIQELQKLEELLQKRWITISKIKEEKMTQEINSLKTKVNAH 168
                     555555665555.....********************************************8876 PP

3K-box40.89.4e-153784392283
           K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                     a L+k++e   re R+l Ge+Le L+lkeLq+Le++L++sl+++ + K +++l++i  l +k
  Vang03g04420.2 378 ASLNKQLEDRSREMRQLNGEELEGLNLKELQKLEERLDSSLNSVYKAKVQIFLAEITILSQK 439
                     67899999999*********************************************988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.2591272IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-361271IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-291286IPR002100Transcription factor, MADS-box
CDDcd002651.45E-361389No hitNo description
PRINTSPR004046.3E-241434IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001468IPR002100Transcription factor, MADS-box
PfamPF003194.4E-232168IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-243449IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-244970IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.64284242IPR002487Transcription factor, K-box
PfamPF014866.6E-7118167IPR002487Transcription factor, K-box
PROSITE profilePS512979.643370440IPR002487Transcription factor, K-box
PfamPF014863.6E-12378439IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
LDDYEIFFEC RMARKKIPIK KIDNINARQV TFSKRRKGLF KKTQELSTLC DAEIALIVFS  60
STSKLFEYAS SSMQQIIERR NQHSGVQGSD IASTGKQCCR FELCNSHCHL KKSHDSIQLN  120
GQDLQGLTIQ ELQKLEELLQ KRWITISKIK EEKMTQEINS LKTKVNAHTD CKSWNVNHFK  180
MAFNFKNHVL IKAACWQFFH LSLFTQPFFC NDIWQLTLLE KEAELTEENQ KLKQKLVREQ  240
CYESITSSSS DFPPDNGSSD TSLKLGSNRA RFSGLLDFDE NGEEEDTDQE DRGRNCEAGD  300
ILKEKEWPFE ESTMQKITER YILCSEWNLD KLDQSYPTEQ DFSRYPLIEY MLITFHVSKC  360
HFFSSVHLIC VVIVQGNASL NKQLEDRSRE MRQLNGEELE GLNLKELQKL EERLDSSLNS  420
VYKAKVQIFL AEITILSQKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-181292185MEF2C
5f28_B2e-181292185MEF2C
5f28_C2e-181292185MEF2C
5f28_D2e-181292185MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g04420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-116AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435318.13e-95PREDICTED: MADS-box protein JOINTLESS-like isoform X1
RefseqXP_017435319.13e-95PREDICTED: MADS-box protein JOINTLESS-like isoform X1
RefseqXP_017435320.13e-95PREDICTED: MADS-box protein JOINTLESS-like isoform X1
TrEMBLA0A0S3S2637e-94A0A0S3S263_PHAAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-28MIKC_MADS family protein