PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g04420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 430aa    MW: 49768.6 Da    PI: 6.7252
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g04420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.97.5e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr+g++KK +ELS+LCdae+a+i+fsst kl+ey+s
  Vang03g04420.1  9 KKIDNINARQVTFSKRRKGLFKKTQELSTLCDAEIALIVFSSTSKLFEYAS 59
                    689**********************************************86 PP

2K-box29.53.1e-11981572387
           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                      Lkk  +++q +     G+dL+ L+++eLq+Le+ L+k   +i + K+e ++++i+ l+ k +++
  Vang03g04420.1  98 HLKKSHDSIQLN-----GQDLQGLTIQELQKLEELLQKRWITISKIKEEKMTQEINSLKTKVNAH 157
                     555555665555.....********************************************8876 PP

3K-box40.89.1e-153674282283
           K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                     a L+k++e   re R+l Ge+Le L+lkeLq+Le++L++sl+++ + K +++l++i  l +k
  Vang03g04420.1 367 ASLNKQLEDRSREMRQLNGEELEGLNLKELQKLEERLDSSLNSVYKAKVQIFLAEITILSQK 428
                     67899999999*********************************************988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.259161IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.45E-36278No hitNo description
PRINTSPR004045.9E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-28376IPR002100Transcription factor, MADS-box
PfamPF003194.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.64273231IPR002487Transcription factor, K-box
PfamPF014866.3E-7107156IPR002487Transcription factor, K-box
PROSITE profilePS512979.643359429IPR002487Transcription factor, K-box
PfamPF014863.5E-12367428IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MARKKIPIKK IDNINARQVT FSKRRKGLFK KTQELSTLCD AEIALIVFSS TSKLFEYASS  60
SMQQIIERRN QHSGVQGSDI ASTGKQCCRF ELCNSHCHLK KSHDSIQLNG QDLQGLTIQE  120
LQKLEELLQK RWITISKIKE EKMTQEINSL KTKVNAHTDC KSWNVNHFKM AFNFKNHVLI  180
KAACWQFFHL SLFTQPFFCN DIWQLTLLEK EAELTEENQK LKQKLVREQC YESITSSSSD  240
FPPDNGSSDT SLKLGSNRAR FSGLLDFDEN GEEEDTDQED RGRNCEAGDI LKEKEWPFEE  300
STMQKITERY ILCSEWNLDK LDQSYPTEQD FSRYPLIEYM LITFHVSKCH FFSSVHLICV  360
VIVQGNASLN KQLEDRSREM RQLNGEELEG LNLKELQKLE ERLDSSLNSV YKAKVQIFLA  420
EITILSQKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18181185MEF2C
5f28_B1e-18181185MEF2C
5f28_C1e-18181185MEF2C
5f28_D1e-18181185MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g04420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150383e-96AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435318.12e-95PREDICTED: MADS-box protein JOINTLESS-like isoform X1
RefseqXP_017435319.12e-95PREDICTED: MADS-box protein JOINTLESS-like isoform X1
RefseqXP_017435320.12e-95PREDICTED: MADS-box protein JOINTLESS-like isoform X1
TrEMBLA0A0S3S2634e-94A0A0S3S263_PHAAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-28MIKC_MADS family protein