PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g04420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 430aa MW: 49768.6 Da PI: 6.7252 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.9 | 7.5e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqvtfskRr+g++KK +ELS+LCdae+a+i+fsst kl+ey+s Vang03g04420.1 9 KKIDNINARQVTFSKRRKGLFKKTQELSTLCDAEIALIVFSSTSKLFEYAS 59 689**********************************************86 PP | |||||||
2 | K-box | 29.5 | 3.1e-11 | 98 | 157 | 23 | 87 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 Lkk +++q + G+dL+ L+++eLq+Le+ L+k +i + K+e ++++i+ l+ k +++ Vang03g04420.1 98 HLKKSHDSIQLN-----GQDLQGLTIQELQKLEELLQKRWITISKIKEEKMTQEINSLKTKVNAH 157 555555665555.....********************************************8876 PP | |||||||
3 | K-box | 40.8 | 9.1e-15 | 367 | 428 | 22 | 83 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 a L+k++e re R+l Ge+Le L+lkeLq+Le++L++sl+++ + K +++l++i l +k Vang03g04420.1 367 ASLNKQLEDRSREMRQLNGEELEGLNLKELQKLEERLDSSLNSVYKAKVQIFLAEITILSQK 428 67899999999*********************************************988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.259 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.45E-36 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 5.9E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-28 | 3 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.642 | 73 | 231 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.3E-7 | 107 | 156 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.643 | 359 | 429 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.5E-12 | 367 | 428 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MARKKIPIKK IDNINARQVT FSKRRKGLFK KTQELSTLCD AEIALIVFSS TSKLFEYASS 60 SMQQIIERRN QHSGVQGSDI ASTGKQCCRF ELCNSHCHLK KSHDSIQLNG QDLQGLTIQE 120 LQKLEELLQK RWITISKIKE EKMTQEINSL KTKVNAHTDC KSWNVNHFKM AFNFKNHVLI 180 KAACWQFFHL SLFTQPFFCN DIWQLTLLEK EAELTEENQK LKQKLVREQC YESITSSSSD 240 FPPDNGSSDT SLKLGSNRAR FSGLLDFDEN GEEEDTDQED RGRNCEAGDI LKEKEWPFEE 300 STMQKITERY ILCSEWNLDK LDQSYPTEQD FSRYPLIEYM LITFHVSKCH FFSSVHLICV 360 VIVQGNASLN KQLEDRSREM RQLNGEELEG LNLKELQKLE ERLDSSLNSV YKAKVQIFLA 420 EITILSQKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 81 | 1 | 85 | MEF2C |
5f28_B | 1e-18 | 1 | 81 | 1 | 85 | MEF2C |
5f28_C | 1e-18 | 1 | 81 | 1 | 85 | MEF2C |
5f28_D | 1e-18 | 1 | 81 | 1 | 85 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g04420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 3e-96 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435318.1 | 2e-95 | PREDICTED: MADS-box protein JOINTLESS-like isoform X1 | ||||
Refseq | XP_017435319.1 | 2e-95 | PREDICTED: MADS-box protein JOINTLESS-like isoform X1 | ||||
Refseq | XP_017435320.1 | 2e-95 | PREDICTED: MADS-box protein JOINTLESS-like isoform X1 | ||||
TrEMBL | A0A0S3S263 | 4e-94 | A0A0S3S263_PHAAN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-28 | MIKC_MADS family protein |