PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g04220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 626aa MW: 70015.5 Da PI: 4.7108 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 196 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +C++sF k+++ +H+ + H Vang03g04220.1 196 FECRKCNMSFDEKDSYLQHLLSvH 219 89******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.78E-5 | 195 | 265 | No hit | No description |
SMART | SM00355 | 0.017 | 196 | 219 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 196 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 198 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.642 | 243 | 270 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.37 | 243 | 265 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 245 | 265 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MNNASVLATS QDPFADELKR RTEGLSSEEE LLGFLRDLPG QWGSRRKKRR IVDASDFGDV 60 LPLSWKILLG LKRKDGRAWI YCRRYIRAYP IFDIPPCSPS GQQFVSCKEV SSYLQSLLGN 120 GDGQSQSSRR SENVVQEQIV PAENSAGVTP ERQDQRQIVA VNAEVPGLFA GARERVKEVA 180 LLGIENLADV QIQDLFECRK CNMSFDEKDS YLQHLLSVHQ RTTRRYRLGS SVGDGVIIKD 240 GKFECQFCHK VFLERRRYNG HVGIHVRNYV RRVEDSPGQI NVQRTDDKSP VREDVPLRIS 300 KMDALIEIAQ NSIMEGCVTE PHHLAKLNGI PASDVAVGYL DQDGNSEAPI SEKQMEDSLT 360 KKNVDHHGMD GKVEEVDNDN RVIDVKMVTF LDNMGLLSVN KQDVKASETS EVKDDVELTI 420 EELDQSGIDL DGVSEVHLSE LNMIPESEKG ENSESSNAKV QFKPDEGISN KSDLEFGLNC 480 LKDVPVTVST DVQEMVMAGS EENVVHSRAF NSSISTEQPM DCLPAFSSDK GGKQFCRLEN 540 EHDNVKGLEE LRFDEIDSVD YDFARIQDSP SPPAVSAELA NDAVMGETFL SSVQFESQLT 600 TLVKQKSLVK STCWTVNRQM LAVYRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g04220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434853.1 | 0.0 | PREDICTED: uncharacterized protein LOC108341719 | ||||
TrEMBL | A0A0S3S232 | 0.0 | A0A0S3S232_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148405.1 | 0.0 | (Phaseolus vulgaris) |