PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g03130.1
Common NameLR48_Vigan09g182500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 854aa    MW: 93545.7 Da    PI: 6.0297
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g03130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Vang03g03130.1 18 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    6789*****************************************************97 PP
2START169.91.7e-531673742204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +e+l  +  g  g+++lm
  Vang03g03130.1 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRQSWYRDCRCVEVLSIVPAGngGTIELM 260
                     68999*****************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+      ++Rae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  Vang03g03130.1 261 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppATTFIRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLY 355
                     ****************************************9999988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k + a+lq+ +
  Vang03g03130.1 356 ESSKILAQKLTIAALQHIR 374
                     ****************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.711377IPR001356Homeobox domain
SMARTSM003898.6E-161581IPR001356Homeobox domain
PfamPF000463.1E-161876IPR001356Homeobox domain
SuperFamilySSF466891.41E-161880IPR009057Homeodomain-like
CDDcd000861.16E-161878No hitNo description
Gene3DG3DSA:1.10.10.601.5E-182076IPR009057Homeodomain-like
CDDcd146861.81E-670109No hitNo description
PROSITE profilePS5084825.951157358IPR002913START domain
CDDcd088752.33E-69161377No hitNo description
Gene3DG3DSA:3.30.530.206.8E-22165349IPR023393START-like domain
SMARTSM002341.7E-50166376IPR002913START domain
PfamPF018525.4E-51167374IPR002913START domain
SuperFamilySSF559611.92E-36167378No hitNo description
SuperFamilySSF559612.2E-5414499No hitNo description
SuperFamilySSF559612.2E-5527605No hitNo description
PfamPF086707.9E-49708852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MALTLHKDSA NNQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYMKQ  120
QIQTASAGTT TDNSCESVVM SGQNQQQNPT PQHPNRDANN PAGLLAIAEE TLAEFLSKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRQSWYRDC  240
RCVEVLSIVP AGNGGTIELM YMQTYAPTTL AAARDFWTLR YTTSLEDGSL VICERSLTSS  300
TGGPTGPPAT TFIRAEMLPS GYLIRPCEGG GSIIHIVDHI DLDVWSVPEV LRPLYESSKI  360
LAQKLTIAAL QHIRQIAQES SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFVDDGWSL  420
MGTDGVEDVT IAINSSPNKF LGSNYNASMF PAFGGGVLCA KASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPSSQVIL PLAHTIEHEE FLEVVRIEGH  540
AFSPEDVTLA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP  600
KSVDLFAITD GPAATRTLDL ASTMEVGSAN ARPSGEADLS GYNLRSVLTI AFQFTFENHT  660
RDNVAAMARQ YVRSVVGSVQ RVAMAIAPSR LSTQLGPKSL PGSPEALTLA RWISRSYRIH  720
TGTELFRAES TTGDAILKQL WHHSDAIMCC SVKTNASPVF TFANQAGLDM LETTLVALQD  780
IMLDKVLDES GRKILCSEFS KIMQQGFAYL PAGICVSSMN RPVSYEQAIA WKVLNDDDSN  840
HCLAFMFMSW SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g03130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437412.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A0L9VDM70.0A0A0L9VDM7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S4E80.0A0A0S3S4E8_PHAAN; Uncharacterized protein
STRINGGLYMA15G13640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  5. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  6. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  7. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  8. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  9. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  10. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]