PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g03030.1
Common NameLR48_Vigan09g180300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 706aa    MW: 78511.8 Da    PI: 6.7315
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g03030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-162779456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +++++q+ +Le++ + +++p++++r++LA+++gL+ rq+k+WFqN+R++ k
  Vang03g03030.1 27 YKRLSSSQTSRLERFIKDCPHPDEAQRRQLAAEIGLEPRQIKFWFQNKRTQIK 79
                    567899*******************************************9988 PP
2START123.72.3e-392254462206
                     HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
           START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla 77 
                     +a +a++elv+++  +ep+W kss                   +  +k             ++ea ++sg+v  ++ +lv  +ld+  +W + ++
  Vang03g03030.1 225 VAATAMDELVRLVRINEPFWIKSSsqdgklclL---------LENYQKMfpktkhfkgpnVRIEATKESGIVNINSLQLVDMFLDSD-KWVNLFP 309
                     6889********************554443332.........3333333344444677889**************************.***9999 PP

                     ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
           START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                         kaetl+vi+ g      galqlm++++ +lsp v  R+f f+R++ q  ++++vi+d+S ds q++p   s+  + ++pSg+li++++ng 
  Vang03g03030.1 310 tivsKAETLKVIERGlpgnrsGALQLMFQQMHVLSPFVQpREFQFLRFCTQ-IEEGLVIADISFDSFQQKP---SIFQSWKHPSGCLIQELPNGC 400
                     9999********************************8766***********.9999************988...7******************** PP

                     EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     + vtwvehv++++++  h l++ ++ +g+a ga +w   lqr ce+
  Vang03g03030.1 401 CMVTWVEHVEVDDKIQtHPLYKDIIVKGVAYGAERWIMELQRICER 446
                     **************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-181283IPR009057Homeodomain-like
SuperFamilySSF466894.02E-161685IPR009057Homeodomain-like
PROSITE profilePS5007115.7912181IPR001356Homeobox domain
SMARTSM003895.9E-172385IPR001356Homeobox domain
PfamPF000463.5E-142679IPR001356Homeobox domain
CDDcd000861.46E-162982No hitNo description
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PROSITE profilePS5084843.152215449IPR002913START domain
SuperFamilySSF559619.2E-31217448No hitNo description
CDDcd088757.43E-96219445No hitNo description
SMARTSM002343.0E-30224446IPR002913START domain
PfamPF018523.5E-33225446IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-8278411IPR023393START-like domain
SuperFamilySSF559615.08E-11478700No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MDSSMASAGG SADEGSQSHN NGRKTSYKRL SSSQTSRLER FIKDCPHPDE AQRRQLAAEI  60
GLEPRQIKFW FQNKRTQIKN QHERADNTAL RVENDRIHTE NVTMQEALKS MLCPSCGGPP  120
CLEGDREHAI HNMRLENMHL KEEHEKVSRL LSRYLESQML PPDQFQQGFF PIIGSSSNAA  180
GLGNPLNQVI GGSSSHDPNL ALHMMDGGHN LFASEGIEKN LMAKVAATAM DELVRLVRIN  240
EPFWIKSSSQ DGKLCLLLEN YQKMFPKTKH FKGPNVRIEA TKESGIVNIN SLQLVDMFLD  300
SDKWVNLFPT IVSKAETLKV IERGLPGNRS GALQLMFQQM HVLSPFVQPR EFQFLRFCTQ  360
IEEGLVIADI SFDSFQQKPS IFQSWKHPSG CLIQELPNGC CMVTWVEHVE VDDKIQTHPL  420
YKDIIVKGVA YGAERWIMEL QRICERFAAF YVEKIPDHDA AGVINSLEGR RSIMNFSHRM  480
LKIFCESITM ADGLDFPLCD LANTSGVRVS IRESKINGQP SGMIVAAATS IWLPLHYMKV  540
FEFFLDDKNR AQWDVLTCGN QAHKVAHISN GIHPGNCVSV IRPFIPSENN ALILQESFTT  600
PMGSYVIYAP TDVATMTAAI MGENSSMLPV LPSGFVICPD GEPNSAMAFD GADTERLGGS  660
LLTVAFQILA SADGRNMPNR KAGAAVNSLL TSTILRVRDA LNCNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g03030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435438.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1
TrEMBLA0A0L9VEM40.0A0A0L9VEM4_PHAAN; Uncharacterized protein
STRINGXP_007147460.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]