PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g02740.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28139.8 Da    PI: 9.7429
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g02740.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.6e-312776150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Vang03g02740.2 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 76
                    79***********************************************8 PP
2K-box106.23.8e-35951945100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqR....hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     s  s++ea+a+ +qqe++kL+++i++Lq+++R    +++Ge+L+s++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr
  Vang03g02740.2  95 SAGSASEANAQFYQQEADKLRAQISSLQNNNRqeelQMMGESLGSMTTKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLR 189
                     4455899*********************665533337********************************************************** PP

           K-box  96 kklee 100
                     +k++e
  Vang03g02740.2 190 AKIAE 194
                     **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.1321979IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-421978IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-332099IPR002100Transcription factor, MADS-box
CDDcd002651.18E-452094No hitNo description
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-332141IPR002100Transcription factor, MADS-box
PfamPF003199.3E-272875IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-334156IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-335677IPR002100Transcription factor, MADS-box
PfamPF014861.5E-24101192IPR002487Transcription factor, K-box
PROSITE profilePS5129714.484104198IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
LQNMAFPNPS MSVSPQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALIVFSSRG RLYEYANNSV KETIERYKKA CSDSSAGSAS EANAQFYQQE ADKLRAQISS  120
LQNNNRQEEL QMMGESLGSM TTKDLKNLES KLEKGISRIR SKKNELLFAE IEYMQKREID  180
LHNNNQLLRA KIAESERSHN MGVLPGGTSY DSMQSQQPFD SRGYFQVTGL QPNSQYARQD  240
QMSLQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-211987169Myocyte-specific enhancer factor 2B
1tqe_Q2e-211987169Myocyte-specific enhancer factor 2B
1tqe_R2e-211987169Myocyte-specific enhancer factor 2B
1tqe_S2e-211987169Myocyte-specific enhancer factor 2B
6c9l_A2e-211987169Myocyte-specific enhancer factor 2B
6c9l_B2e-211987169Myocyte-specific enhancer factor 2B
6c9l_C2e-211987169Myocyte-specific enhancer factor 2B
6c9l_D2e-211987169Myocyte-specific enhancer factor 2B
6c9l_E2e-211987169Myocyte-specific enhancer factor 2B
6c9l_F2e-211987169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g02740.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828330.0AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517920.11e-176floral homeotic protein AGAMOUS isoform X2
RefseqXP_017434001.11e-176PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_017434002.11e-176PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_017434003.11e-176PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_022642888.11e-176floral homeotic protein AGAMOUS isoform X1
RefseqXP_022642889.11e-176floral homeotic protein AGAMOUS isoform X1
SwissprotQ408851e-130AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A0S3S3731e-175A0A0S3S373_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VI101e-175A0A1S3VI10_VIGRR; floral homeotic protein AGAMOUS isoform X1
STRINGXP_007147970.11e-159(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-120MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]