PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g02740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 286aa MW: 32409 Da PI: 10.3709 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.9 | 2e-31 | 65 | 114 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Vang03g02740.1 65 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 114 79***********************************************8 PP | |||||||
2 | K-box | 105.8 | 5.2e-35 | 133 | 232 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqR....hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 s s++ea+a+ +qqe++kL+++i++Lq+++R +++Ge+L+s++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr Vang03g02740.1 133 SAGSASEANAQFYQQEADKLRAQISSLQNNNRqeelQMMGESLGSMTTKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLR 227 4455899*********************665533337********************************************************** PP K-box 96 kklee 100 +k++e Vang03g02740.1 228 AKIAE 232 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-42 | 57 | 116 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.132 | 57 | 117 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.41E-45 | 58 | 132 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-33 | 58 | 137 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 59 | 113 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-33 | 59 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 66 | 113 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-33 | 79 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-33 | 94 | 115 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-24 | 139 | 230 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.484 | 142 | 236 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
LLSGKREGKK KKGKKSFRGL AQKSVVSLII FSFCFLTRLQ NMAFPNPSMS VSPQRKMGRG 60 KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYANNSVKE 120 TIERYKKACS DSSAGSASEA NAQFYQQEAD KLRAQISSLQ NNNRQEELQM MGESLGSMTT 180 KDLKNLESKL EKGISRIRSK KNELLFAEIE YMQKREIDLH NNNQLLRAKI AESERSHNMG 240 VLPGGTSYDS MQSQQPFDSR GYFQVTGLQP NSQYARQDQM SLQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-21 | 57 | 125 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g02740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY382833 | 0.0 | AY382833.1 Glycine max MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517920.1 | 1e-176 | floral homeotic protein AGAMOUS isoform X2 | ||||
Refseq | XP_017434001.1 | 1e-176 | PREDICTED: floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_017434002.1 | 1e-176 | PREDICTED: floral homeotic protein AGAMOUS isoform X2 | ||||
Refseq | XP_017434003.1 | 1e-176 | PREDICTED: floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_022642888.1 | 1e-176 | floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_022642889.1 | 1e-176 | floral homeotic protein AGAMOUS isoform X1 | ||||
Swissprot | Q40885 | 1e-129 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0S3S373 | 1e-174 | A0A0S3S373_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3VI10 | 1e-174 | A0A1S3VI10_VIGRR; floral homeotic protein AGAMOUS isoform X1 | ||||
STRING | XP_007147970.1 | 1e-159 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-120 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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