PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang03g02000.1 | ||||||||
Common Name | LR48_Vigan09g220700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 35956.6 Da PI: 6.3418 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 48 | 96 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIr p + + r++lg+f+taeeAa a+++a+++++g Vang03g02000.1 48 FLGVRRRP-WGRYAAEIRNPLT---KERHWLGTFDTAEEAALAYDRAALSMKG 96 56******.**********743...4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.521 | 47 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.52E-28 | 47 | 103 | No hit | No description |
SMART | SM00380 | 7.2E-31 | 47 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 48 | 59 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-20 | 48 | 105 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-27 | 48 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-11 | 50 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MSTSRTSDVS LKGYQSKPTQ MNLSLLQRNA STSGERRGRG KQAEPGRFLG VRRRPWGRYA 60 AEIRNPLTKE RHWLGTFDTA EEAALAYDRA ALSMKGCQAR TNFVYSKDTN IFHNALTPFN 120 SQPLLPPSHN THNNMQLTNQ TTLSHLPTFT SHVENPSSDL YADSETAFGS PQDDNFFFST 180 QSNSGYLECI VPGNCFKKSN ASASGRDLEV GHVNSNSMQI QPHFDTTQEA FNMQATVAPD 240 YADFSCPTDL GKGLWDNHQS WDCSSNELAA MFKNPSRVVE EGCMDALHPF TDSSNYELIT 300 QVVSSTTYSP SVPPFGNVGS AYSPF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-21 | 38 | 103 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang03g02000.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434798.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q6J9Q2 | 1e-52 | ERF86_ARATH; Ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A0L9VEX2 | 0.0 | A0A0L9VEX2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147885.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5784 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18560.1 | 2e-44 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|