PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g01200.2
Common NameLR48_Vigan09g198800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 554aa    MW: 61903.6 Da    PI: 6.2962
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g01200.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.41.5e-1281815512374
            GRAS   2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e+L +cA+avs+gd e a  ++++ l +++s  gdp+qRl ay++e+L+arl +s+s +ykal++++ +   s++ +++++++++++P+ kf++
  Vang03g01200.2 181 KEVLSRCAQAVSDGDIETAVGFMNNvLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPA---SKDLMSYMHILYQICPYWKFCY 272
                     789********************8726788***************************************9...99999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN  I ea+++e+r+HiiDf+i qG+QW+ L++aLasRp+g+p +R+Tgv+++es+  +   l  +g+rL+++A++++vpfef+  +a +  +
  Vang03g01200.2 273 VSANAVIGEAMQNESRIHIIDFQIAQGTQWMLLIHALASRPGGTPFIRVTGVDDSESFhaRGGGLDIVGKRLSEYAKSCRVPFEFHS-AAMSGCE 366
                     ******************************************************9999889999***********************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +ele+L v pgEalaVn+ + lh+++desvs+e++rd++L+ vk+lsPkvv++veqe+++n+++F++rf+e+l+yysa+f+s+++ lpre+++ri
  Vang03g01200.2 367 VELENLVVLPGEALAVNFPFVLHHMPDESVSTENHRDRLLRRVKNLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMFESIDVALPREDKQRI 461
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn++aceg er+erhe l+kWr+r+++aGF p pls+++++ ++ +lr+++++ yr+e+ +g+l+lgWk+r+L + SaWr
  Vang03g01200.2 462 SAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGN-YRLEHIDGALYLGWKRRALCTSSAWR 551
                     **************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.322154532IPR005202Transcription factor GRAS
PfamPF035145.3E-126181551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MQTSQKHPAS SGFDLYHQPV QNVDPYTRYQ VLQSNSCHEI HDSNSQGTTI SFEPCKEQYF  60
TLESSPALND LIGCDSPSYA SVSSNSNRSP FSPHASHSYH SDQHQSSDNN YGSPTSAHSS  120
ADDSYELKHK LRELEISLLG PDSEIVDSCH CCYEGGHHGA SPMAKYNWDQ VVEMIPKLDL  180
KEVLSRCAQA VSDGDIETAV GFMNNVLPKM VSVGGDPIQR LGAYMLEGLR ARLESSGSLI  240
YKALKCEQPA SKDLMSYMHI LYQICPYWKF CYVSANAVIG EAMQNESRIH IIDFQIAQGT  300
QWMLLIHALA SRPGGTPFIR VTGVDDSESF HARGGGLDIV GKRLSEYAKS CRVPFEFHSA  360
AMSGCEVELE NLVVLPGEAL AVNFPFVLHH MPDESVSTEN HRDRLLRRVK NLSPKVVTLV  420
EQESNTNTSP FFQRFVETLS YYSAMFESID VALPREDKQR ISAEQHCVAR DIVNMIACEG  480
PERVERHELL GKWRSRFSMA GFAPCPLSSS VTNAVRNMLR EFNGNYRLEH IDGALYLGWK  540
RRALCTSSAW RCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5718655024377Protein SCARECROW
5b3h_D1e-5718655024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g01200.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437366.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_017437367.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0L9VF670.0A0A0L9VF67_PHAAN; Uncharacterized protein
STRINGXP_007147638.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]