PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g00950.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 599aa    MW: 66537 Da    PI: 5.3138
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g00950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.18e-1997188490
                     E-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F ++ + +f
  Vang03g00950.1  97 TLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRQVDCGF 188
                     6899***********************975444444..8***********************************************96554555 PP
2Auxin_resp64.63.5e-222072641975
      Auxin_resp  19 astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdld.pvrWp 75 
                     +s+seF+v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv d + +v+W 
  Vang03g00950.1 207 TSRSEFIVSVNKYLEAKSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKsSVQWD 264
                     689*********************************************9976256775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.2E-1495196IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-3297188IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-1797188IPR003340B3 DNA binding domain
CDDcd100172.13E-1597180No hitNo description
Gene3DG3DSA:2.40.330.102.2E-3197191IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.728133196IPR003340B3 DNA binding domain
PfamPF065072.4E-19207264IPR010525Auxin response factor
PfamPF023096.1E-6472510IPR033389AUX/IAA domain
PROSITE profilePS5174526.402474567IPR000270PB1 domain
SuperFamilySSF542771.11E-10475551No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MASAAPGSTN DALYKELWHA CAGPLVTLPR EGVRVYYFPQ GHMEQLEASM NQGLEQQMPS  60
FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADTLTA SDTSTHGGFS VLRRHADDCL  120
PPLDMTQQPP WQELVATDLH GNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF  180
LRQVDCGFLL SLYAIPGVKM ESCELETSRS EFIVSVNKYL EAKSHKLSVG MRFKMRFEGD  240
EVPERRFSGT IVGVGDNKSS VQWDEPSSIL RPDRVSPWEL EPLVSTPPTN SQPSQRNKRS  300
RPPILPSTLA DSSLQGVRKS PVDSAPFSYR DHQHGGDIYP PAKFNSTATG FLGFGGNCSA  360
SNKSIYWSSR TENSTESFLP VALKESGEKR NVTANGCRLF GIQLLDNSNG EESLPMVTLS  420
GRLVDDVPLP SLDAESDQHS EPSNINRSDI PSVSCDVEKS CLRSPHESQS RQIRSCTKVH  480
MQGMAVGRAV DLTRFDGYED LLRKLEEMFD IKDELCGSPK KWQVVYTDNE DDMMMAGDDP  540
WLEFCSIVRK IFIYTAEEVK KLSPKIGLPI SEEVKPSKMD SEAVVNPEDQ SSIVGSGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-15222857357Auxin response factor 1
4ldy_B1e-15222857357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g00950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436467.10.0PREDICTED: auxin response factor 1-like isoform X2
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A0S3S1N80.0A0A0S3S1N8_PHAAN; Auxin response factor
STRINGXP_007148592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]