PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0397s00110.1 | ||||||||
Common Name | LR48_Vigan833s001000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 445aa MW: 49606.8 Da PI: 9.5554 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 23 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k+F+ +L HirtH Vang0397s00110.1 23 YVCKYCSKRFPCGKSLGGHIRTH 45 9**********999999999998 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.00011 | 117 | 137 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F++ L H+ +H Vang0397s00110.1 117 CKECGKGFPSLKALCGHMASH 137 ******************999 PP | |||||||
3 | zf-C2H2 | 10.9 | 0.0014 | 389 | 411 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k F++ L H r+H Vang0397s00110.1 389 HECPICYKIFRSGQALGGHKRSH 411 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 19 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.57E-10 | 21 | 45 | No hit | No description |
Pfam | PF13912 | 6.2E-7 | 23 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.078 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.115 | 23 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.57E-10 | 110 | 137 | No hit | No description |
SMART | SM00355 | 0.063 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.034 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-7 | 117 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-11 | 389 | 411 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 389 | 411 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.141 | 389 | 411 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 391 | 411 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MQFEEVMRKT RFTSRQSMEE RKYVCKYCSK RFPCGKSLGG HIRTHMTEER SNADADIFIK 60 SDGVKKKRDL WCEDVVGNPI YGLRENPKKT MRFVHSGARR GCGSGVAGAN NEKEKFCKEC 120 GKGFPSLKAL CGHMASHSDK EKRTIKCLMM LSRDSSFKGR FASVTECSDN NSVVLEAKSS 180 SPDIRIGVSN GNYNFVSNNA YDLVDNKLLR VNDIKLKSVE FGASDNSGSR YFKHGPKTKM 240 VDSDVSNDQF KWPKVGDKSS KYTATLVKKS VMEELDYDGT DGTARKFDSR KRSNYDSLDN 300 NPVGGSSKKI ANGFGNEVYG NSTKGWKYES LEGERDYDSF DYSIEESHEN SSETESYPAP 360 RSHNSKALNG KKSTSKAKKK LKSKKSRDHE CPICYKIFRS GQALGGHKRS HFIGGSEENT 420 LVIKQAAPVV PCLIDLNLPA PVDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0397s00110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410835.1 | 0.0 | PREDICTED: uncharacterized protein LOC108323021 isoform X1 | ||||
TrEMBL | A0A0L9THI2 | 0.0 | A0A0L9THI2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R2G4 | 0.0 | A0A0S3R2G4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158625.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1101 | 30 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 8e-56 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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