PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0380s00160.1 | ||||||||
Common Name | LR48_Vigan03g196700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22707.8 Da PI: 8.2913 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.7 | 6.9e-37 | 28 | 129 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk +r+kC++dC++apyf ++q + fa+vhk+FGa+n++kll +++e +r++a++sl+yeA+ r+ +Pv+G+v++i++lq+q+++l+ Vang0380s00160.1 28 PCAACKKMRKKCSSDCIFAPYFGSSQgSTLFAAVHKVFGANNLSKLLLEVEEIHRNEAINSLCYEAQTRLANPVHGCVSTISALQRQVASLQG 120 7*********************99997899*************************************************************** PP DUF260 93 elallkeel 101 ela+++++l Vang0380s00160.1 121 ELAMVQNQL 129 *****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.206 | 27 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-36 | 28 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MANEAEASVE KHKSKVSKCV RSRASSPPCA ACKKMRKKCS SDCIFAPYFG SSQGSTLFAA 60 VHKVFGANNL SKLLLEVEEI HRNEAINSLC YEAQTRLANP VHGCVSTISA LQRQVASLQG 120 ELAMVQNQLI NTQNLYESLL GRTYQQQQAN INVVVQPSAN NVMNMSYFNP GFDHLSMQTA 180 PSTDNMQPLP FSGLPHFNND IPHFFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-30 | 28 | 131 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-30 | 28 | 131 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0380s00160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416704.1 | 1e-153 | PREDICTED: LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 2e-42 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0L9U717 | 1e-151 | A0A0L9U717_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162000.1 | 1e-112 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28507 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-44 | LOB domain-containing protein 20 |
Publications ? help Back to Top | |||
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