PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0376s00120.1 | ||||||||
Common Name | LR48_Vigan08g125800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20140.7 Da PI: 8.6111 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 63 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f ta Aa a+++a+k+++g Vang0376s00120.1 63 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFSTAISAALAYDEAAKAMYG 113 56*****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-13 | 63 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-30 | 63 | 123 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-21 | 64 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.43 | 64 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-37 | 64 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 64 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-10 | 65 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-10 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MLVKDHNRGD GSKSLAYTLA RWKEYNAWLE SSNEAEKAVR KVPAKGSKKG CMKGKGGPEN 60 TLCNYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFSTAISA ALAYDEAAKA MYGSVARLNF 120 PNLEVSALSE ESSRNSPAGS QCGSALVISE SSECMIFPNS SEGDKAKDDD MEGLSLSLSV 180 KHEVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-19 | 64 | 121 | 5 | 63 | ATERF1 |
3gcc_A | 4e-19 | 64 | 121 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0376s00120.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432522.1 | 1e-134 | PREDICTED: putative dehydration-responsive element-binding protein 2H | ||||
Refseq | XP_017432523.1 | 1e-134 | PREDICTED: putative dehydration-responsive element-binding protein 2H | ||||
Swissprot | Q8LFR2 | 6e-49 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A0L9V5V8 | 1e-133 | A0A0L9V5V8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SBR2 | 1e-133 | A0A0S3SBR2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132590.1 | 1e-105 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 2e-45 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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