PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0370s00210.1 | ||||||||
Common Name | LR48_Vigan50s010200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26168.1 Da PI: 4.806 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 96 | 145 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r+++g+f+tae Aa a+++a+ + +g Vang0370s00210.1 96 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 145 9*******.**********44465..**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.721 | 95 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 95 | 155 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.5E-35 | 95 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-29 | 95 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-12 | 96 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-18 | 96 | 154 | No hit | No description |
PRINTS | PR00367 | 2.1E-10 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDLPLDLDFD YHLFPNQNLN FFENAGDPFS WDYNFDDIFN FSYDQTKESS SASNVSGSVG 60 SVELHEVSSD NTTYEDVSKE TEPVAAPVPV KEGRMYRGVR KRPWGKFAAE IRDSTRNGVR 120 VWIGTFDTAE AAALAYDQAA FSTRGSLAVL NFPVEVVRES LKDMPSKPWE EGSSPVLALK 180 RKHTMRKKSS SKKKKSKSDG REQLEFCTTS QNVLVFEDLG AEYLEQLLSL TY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-28 | 92 | 156 | 2 | 66 | ATERF1 |
3gcc_A | 3e-28 | 92 | 156 | 2 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 194 | KRKHTMRKKSSSKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00286 | DAP | Transfer from AT2G31230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0370s00210.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442917.1 | 1e-173 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | Q8VYM0 | 2e-54 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A0L9T3N0 | 1e-171 | A0A0L9T3N0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RYB1 | 1e-171 | A0A0S3RYB1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162539.1 | 1e-124 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 3e-44 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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