PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0363s00090.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 378aa    MW: 42967 Da    PI: 8.3967
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0363s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-10166199135
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                       +g W++eEd  lv++vk++G + W+ Iar ++ gR
  Vang0363s00090.1 166 KGQWSAEEDSVLVQLVKRFGIKKWSHIARLLN-GR 199
                       799*****************************.98 PP
2Myb_DNA-binding61.81.4e-19200242145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +W++eEd++l++a+k+lG++ W+ Iar+m+ gRt++ +k++w+
  Vang0363s00090.1 200 KESWSEEEDKILIEAHKELGNK-WAEIARRMP-GRTENTIKNHWN 242
                       578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.259161196IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-11162200IPR009057Homeodomain-like
SuperFamilySSF466898.11E-22163241IPR009057Homeodomain-like
SMARTSM0071712165197IPR001005SANT/Myb domain
PfamPF002492.4E-7166199IPR001005SANT/Myb domain
CDDcd001672.75E-7169199No hitNo description
PROSITE profilePS5129423.119195249IPR017930Myb domain
SMARTSM007173.6E-17199247IPR001005SANT/Myb domain
PfamPF002491.9E-17200242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-19202243IPR009057Homeodomain-like
CDDcd001677.10E-14202245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEFSPSFPEK IHYLSGIFPE IKTEIPVSEE NSSFMYQNNF NHFQQHHHLN ESNHGQPESF  60
FTEGSSSIIT PLFSLSSAAH SSGGPSSYKS TYPNESLKGG YANPYYPMAY APNNTNAQSM  120
HGHPNKVIWD FSQKSPVHSG PSATSDPQVQ RKSNAQIQQR MTNIIKGQWS AEEDSVLVQL  180
VKRFGIKKWS HIARLLNGRK ESWSEEEDKI LIEAHKELGN KWAEIARRMP GRTENTIKNH  240
WNATKRRQKA KRQRNKRRSS KGSPTLLESY IRKVTAAEES EKELKNSMSK MNLNDTTKTG  300
LFRVRYESSE GDFSSEEEEL GWTLQHHVPC GGDGGYVPVM VNAGEESAID YEVAMQMVPE  360
VQMRKEMDLM EMIYRKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-271642482104C-Myb DNA-Binding Domain
1msf_C5e-271642482104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244257KRRQKAKRQRNKRR
2248253KAKRQR
3251256RQRNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0363s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417924.10.0PREDICTED: myb-like protein Q isoform X2
TrEMBLA0A0L9U6800.0A0A0L9U680_PHAAN; Uncharacterized protein
STRINGXP_007140966.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-35myb domain protein 98