PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0345s00120.1
Common NameLR48_Vigan08g034200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 324aa    MW: 36156.3 Da    PI: 6.877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0345s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.12e-54171421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i++vd+yk++Pw+Lp+k + +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++
  Vang0345s00120.1  17 LPPGFRFHPTDEELVVHYLKKKVDSVPLPV-SIIADVDLYKFDPWELPAKSSFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIC 108
                       79****************************.89***************8888899************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s ++++vg+kk+Lvfy g+ pkg+ktdW+mheyrl
  Vang0345s00120.1 109 S-GTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRL 142
                       *.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-667176IPR003441NAC domain
PROSITE profilePS5100561.25917176IPR003441NAC domain
PfamPF023651.8E-2818142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDSTEDSSTS SQQQPNLPPG FRFHPTDEEL VVHYLKKKVD SVPLPVSIIA DVDLYKFDPW  60
ELPAKSSFGE EEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPICSG TQKVGVKKSL  120
VFYGGKPPKG VKTDWIMHEY RLAETKPNNR PPGCDLGHKK NSLRLDDWVL CRIYKKGNTQ  180
RSAMEQERDD SMDDMIGEVP SSMNVGHMNA RFHLSKMCTS YSGALLENDR NTLEGVVIGN  240
GVNGMSTTTT SAMPSQFGTS ASKRTLSTLY NWNDDSDEKH FNLDTNGNVS VVRTEENNAS  300
PGSFATLLNQ LPQYQIQGTN WYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-73111789170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0345s00120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312150.0KT031215.1 Glycine max clone HN_CCL_7 NAC transcription factor (Glyma12g22790.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433934.10.0PREDICTED: NAC transcription factor 56
SwissprotQ9LD441e-105NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A0L9V3940.0A0A0L9V394_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S9E10.0A0A0S3S9E1_PHAAN; Uncharacterized protein
STRINGXP_007133059.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-106NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]