PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0337s00140.1 | ||||||||
Common Name | LR48_Vigan10g193400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 276aa MW: 30000.4 Da PI: 8.0472 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101 | 1.1e-31 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+ Vang0337s00140.1 4 SCNGCRVLRKGCSEDCTIRPCLewiknPESQANATVFLAKFYGRAGLMNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLC 96 6******************************************************************************************** PP DUF260 89 qlkaelallkee 100 q+++e++l +e+ Vang0337s00140.1 97 QAAVEAVLKGEP 108 *****9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.936 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEDCT IRPCLEWIKN PESQANATVF LAKFYGRAGL MNLINAGPQN 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGEPIT PITSEVAANG 120 RAPPLKACDI RHVSKDENTA NRTQKAKTRI RVKRTCGDVL IKPKAPTVTG FVPVEAETNQ 180 TTSHESGLSH LSEAAAIVEG ESKESESVVS VETCNLFGET KTSDRFGATN DEIGLELRLG 240 LEPVSREHHM VPMKKRRIEV KSSCDLMELG LESSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0337s00140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438888.1 | 0.0 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 1e-104 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A0L9VMD9 | 0.0 | A0A0L9VMD9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T905 | 0.0 | A0A0S3T905_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151649.1 | 1e-175 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 9e-99 | LOB domain-containing protein 41 |
Publications ? help Back to Top | |||
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