PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0333s00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29079.9 Da PI: 7.119 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 44 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GV++++ +g+++AeIrd +kr r++lg+f+ta eAaka ++a+ +l g Vang0333s00110.1 44 HYTGVCQRP-WGKFAAEIRDS---NKRwSRVWLGTFDTAIEAAKANDRAAFRLCG 94 89*******.**********4...3357***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.33E-26 | 43 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 43 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-28 | 44 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 44 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.638 | 44 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-19 | 44 | 104 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-8 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MLLEPHIASQ ETSIKLETFS TNLSPQEGRV DQFGKSENQL EKKHYTGVCQ RPWGKFAAEI 60 RDSNKRWSRV WLGTFDTAIE AAKANDRAAF RLCGSKAILN FPLEVGAMDA TVKAEGERKR 120 QRQEEGVEEV KPVVKKEKTT EQEVNCFREM SLMPKVEDDQ STQMVSSSNL HIQASLELHH 180 YSIITIVFFS KILPPHAHAS IFHIHHTDHN PGPRSSILPF NSILNPLLFR SYLKYSNSTG 240 VGFGDASSVE GIAMVVAGGE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-26 | 43 | 105 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0333s00110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422112.1 | 2e-44 | PREDICTED: ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0L9T5Q4 | 1e-115 | A0A0L9T5Q4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA11G03900.1 | 8e-41 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-34 | ethylene responsive element binding factor 5 |